G52131


Basic Information

Item Value
gene id G52131
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13771560 ~ 13776929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65235
GTTAAATAAGATGGTTCGGAGACGGTAACGGCACAGCTGTGTAGAGCCAGTCATCCTGCCAGTAGACACAGAGGGAGCAGCTGCCGTCCTCACACCAGCACAGGAGAGACCGCTGCACGCCCCAGCCCTCCCCCACTCCCACGACTCCTCTCCTGGACAACCCCCACCCTGCTGCCTACCCCTCAGCCCCTCTGGGATAAATGATTTGTCTAGCTGAGCTCAGCAGGGTTGGGATACAGACCAGGACCCACACAGGTGAGTGGGTCATGGCCTCGATTTCGTCACGATCCCCATTAATGATATTCCAGAGTGTATCcgtaatggtttgatgggataTGTAATTCAATAGATAAATAACTAacttggtaaaaaaaaaaaaattcaatataAATCTTCAGAAGTTGAAAGCTTTGAGTTTTTAATGGGTTTCAACTTTCTGCCTGGAATGTGAAGCGATCACACTGGAGTAAAAATCTcatcacccctctctctctctctctctctctctatctatctatcta

Function

GO:

id name namespace
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65235 True 521 lncRNA 0.48 2 13771560 13776929

Neighbor

gene id symbol gene type direction distance location
AMCG00008879 NA coding downstream 170 13737882 ~ 13771390 (-)
AMCG00008878 NA coding downstream 37522 13720710 ~ 13734038 (-)
AMCG00008872 NA coding downstream 128185 13638657 ~ 13643375 (-)
AMCG00008873 NA coding downstream 162612 13585087 ~ 13608948 (-)
AMCG00008874 NA coding downstream 186729 13580416 ~ 13584831 (-)
AMCG00008882 ddx23 coding upstream 54278 13831207 ~ 13839926 (-)
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding upstream 89725 13866654 ~ 13881491 (-)
AMCG00008887 LOC103368342,LOC104967533,LOC101064836 coding upstream 114351 13891280 ~ 13897417 (-)
AMCG00008891 neurod4,LOC105013535,LOC106567036 coding upstream 240421 14017350 ~ 14021503 (-)
AMCG00008890 NA coding upstream 264844 14041773 ~ 14042907 (-)
G52019 NA non-coding downstream 315708 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 331934 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 471277 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 513941 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 555565 13214272 ~ 13215995 (-)
G52157 NA non-coding upstream 46184 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 228798 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 350310 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 495045 14271974 ~ 14275087 (-)
G52314 LOC105897838 non-coding upstream 584004 14360933 ~ 14365179 (-)
G52099 NA other downstream 84823 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 446333 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 462135 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 509738 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 587204 13135732 ~ 13184356 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 161522 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 916901 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1063778 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1255418 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1692745 15469674 ~ 15505517 (-)

Expression


Co-expression Network