G52157


Basic Information

Item Value
gene id G52157
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13823113 ~ 13830315 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65263
CAGTTAATAGCACATTAAGCACTTGACTAACAAATAGTCAATACATGCATTCATTGGACTAATCCGCTTCACAAAGGCTCCAAAAAACGCCAGAAGCAATTTGTCAGTAATAAAAGTACATCAAATCTTAggtttattattactatattttttttaatttctatttaaaaacaggCATTATATACAGCATCAGGcaggatattatatatattttgacatttgttttcttcggAAATACAGAGGGAAGGGGCGTGTCTATCGTCACGCTAGCACATTGGTTCGCGTCAAGTGTCTTACATTTAGTGCATCACTGCAGTACAAAGCGGATAtcgaaaaagaaaagaaaataaagtgcatttttttCTACCTACACAGAAGAGGAAGTTTCAGTCATCTAAGGCGTTTTCTTTAATTCTAGGCTTTGTATTGCATACAGAATTAAAAGGAAATCTTACCATTACAATAATCATCATTTCTAAAATTGTGCTTCAGAGGAGATCCAGAcctgtttcattattattccaCTGGGAAGAGAATAATAAATGATGATGAATGATGGAATTTGCATCTCCAGTCCTCAGGTCACATGGCCACTGTTGATGGGTTTTGTAACCTCCGTGCCCCTGGTATAAGTCAAGAGTGGCAAACAAATGAGATGTTAACTAAACAATTTTCAATCCATCAGGGGTTTATTTATGTTACTAAGAACTGGGCCAGATCCAAAGCCAGGAGCAGGGCCTTGTTTCCCAGAGGACCGTTGTTGAGGAGCACTCATTATAAACCTGCAGGACTGGATTGAAGGTTGTGCAGGAGGCAGCAGCTTCACCTCTACCAATCATTGCTATAAGCTCTGCCCAGAACCCACTGCTCTCCCTCAGTCTGGTTAAAGACTTGAAGTAGAATGTACCTTGAGAGGATGATTTTTTGCTTGTGATGTAAGCAGTGtcaacacacagatacatacagtACAATGATGGGACAAAAAGGACAGGCCCTCACATTAAGATGGACCGATATCTGAACTGAGCATGGCAAAAGGAAGAGCTTGTGGGTATTAGGGCAAGGGTgtgcagccctggtcctggagaaggcgAGCTCTGGCTCTGACACTCTGCGCTAATATATTATAGATTTCCGTGTTTCCCGGATCTCTGCCCATCGATCAGTTGAAGCTCCTGCAGGCCTGTGTCTCCAGGACCAGGCCTAAACAGTCTCTCCTCTCACATCCCCTAGGTGCTCATTTTCTACtcagcaacttttttttttttttttgtggtccataattttttttcttattttctgtgaTGTATTGCTCATgcttacattttgaattgtcTCTCCTCCcacctgtgtgagtgtgtgtgtgtatctcccAGCAATCTGCAATCCAGCCCCGAGCTACATCATATTGTGTGCGGACCTCGTAACACACTGCTCTGGTAACCTGGCATCTCTGAGAGTAGGCCCTTTCACAAAGCTCCAgtacttcatttaaataatctttttgctattaagattatttaaatgtttttgatgaCTGTATTTAGTTCCTTTGAGGAGTGGGCTGGGATTGGGTGATCACACAAATGTACTATAATACCCCTCAGCCCTGGTCCCTCCAAACCAGCAGGATGTGTAGGCTTTTTTAAggaagtgcaaaataaatagttatggGTCAGCGGGGGAAATATGAATTCCAGGCATTCGGAAAACCTAGATGTTTAGTGGCTCTCCTAGACCAGGGTTGGTTAGCCCATAATACGTATCAAATGTAGAGATCGACGCAGACGTTTTTGACACTGATACTGTTTTCTTCACAAACAATAaatctttatattttacttatagCTTTGTGAAAAGTGCCCccaatattttttactttttgggGTGGGAAgaattcaacatttaaaaacatattctgaATATAAGTTATCATTGCACACATTCCACTTCCATTAATTGCgatgtatttattcaaacaaGTTAAATACACCgtttcacacattttctttcaatatatattaacGTGGTGATCTTAAAACGCTACGCCCTATCCGGATCgctttatttttgcataaaaCGTGTTAATGGTCTAGGTTCAGAAACGGTAATTGGTGGGTTACTTGACTTAAATATGCTCTCTGTATACTTGTGTATAAAAACGTGAAATCATTCAAactgtttataataattatgagaAGGATAATTCATTAGTAAAGTATATGAgaactgtataaataaacaatcagcTTTTCATGCAACACTTGCATAGGGAAGAAAATTCTTTCAGGTCATGCTgtaattttttccaaaatactgAACAATTAAGTAGGTTTGAAACAGACATAGAAAGATGACAAAGCTGCAGTATATTGCAGAGAGAAGACTACATCAGCCCCACTGTTCCctggctgggctgggctgtgtggGGTATACATGTCGGCTCTTTTGTTACTGCTGTCCTTGTGTGCACTCCCAGGAATATTTCTGCTTGCACTTCAGTGTAAACATGCACTCCACTCCTAAGTGAACTCCAGATTGACAAAGAAGTGCAAAAGAAAACGAAACAGGGAAACCTTTCTTTTCAGCTCCTGCATTCTCTTCCTGCATCAATTACAATGCAGCAAATTTTGCAAAAGTAAGTCAAATGTGGAGGGAGaactacaaaatgaaatgaaacctacccaatcatttaatttgataaGTGTACCATTTAAACACCTGTCACGATGGCTTTCAGGAAAATGTCCCAGCAAATTTGTAATCAggagaaaacattaaatgaaaaaaaacaattctgagTTTCCAAAATTCACAAGGTTTTCCCGAGCGATTGCCATTAGTGTTCTCCAACGTACATTGCTCAGAAAAGCTCAAATAATCTAACCCCATTCCATATCAGCCTTGTCCCAGACACACAGCCTAGCCCGGTACCCATCCTGAAGGTGCCTGCAGCACAATTTGTGGGAACATGTCTGAAAACTTGGTGGGGGGGTTATAATAATAagataacaaatacaattaaaaaactcTGCCTGACAATAATATCAAGCAGAGAAGTCAAGTGCTAAGTCAAGAAGAGGCCTCCTGTTCCGGTGATAGGGAGGGGGATGGGAATGTTCTATCAAAGTTGTGTGTATTCAATCTGGGTGTCAccttttttgtagtttttgcaTTCACCATAGTCTgaagatgtttgtgttttgtttggtcactgaagtgtgtgtgtcagggggaGGATGTACAGGGCACAACAGCCAATCTTAGCTTATTCCTTTTAGTCATTGGTtttgaggagaggagaggagaggagagcagggTGTTTATAAACTGAATTCAGAACGACCGCATAGTGAAAACACTGTTTTGTATGTGTTCCATTGCTCGGCAGTGCACCGTTATCACAATACAGTGGTCTACAGACGCCACGTTTAGGAGACTCTCTGTATCTGGACACTGAAGTGCCAAAACAAGATGATCAGTTGGAGAAATAGAGCAGGACTGGTGGGAAAGGAGATCACTTAAATACTGCCACCACCAGAGGGTAACAATTGTGGATTTTAAACAGAGTGGAAGGGGGCAGGACCGGGTTGAATAGATGCGGAGTGTcatggtattttattttgttagtacAGGAATTTTGTCTGGCTGTTTAAACTCCTCCTTGTTGCTACAACTGACCAATCAGCCCTGATAATGGTGGTCTATCATTTGAATCGctgatattgattttaataactataataataattagaatatTAATGACAACAACATAATCTGTGATACTGTCGGTGTTTACTGTGATACTGTTGGCCAGCACCTGTCTAGTAAGTCTTGGCAGTGAAAAGACAGGggggctgttgttgttgttgttgtgaaaaTTAAGTATCTGTAGAACAATCAAAAAGCAAAACGACAATCAATAGGAGAGGTAGCGAGCTCCAGATAGACGTGTTCATGCGGCTCGCTCCAGATACGAATGAAGTGCAAGCTGGAAGAAGGCCAGAGGTGATAAGGCATGCAAGATACATTCCTGTGAGTCTGCGAGAGAAAGCATATGTGTGTGCGCTGTGTGTGCATGACTGAGTgtccctgtgtttgtgtgtctttacaTGGGGTCACCTGTTTCAGGAAAGGATTTGGGAATGTGCTGAATTCACTCCCCCCGCCATTATCAGATCACAAGGCCTATATACCGTCTGGCACACCACTATAATAAGTCGTGGCTGCCCCCCCTCCTCACAGTGCACTGCTGAAGTTGGACTTAGTTTAAGTGATATAGCAGTGCCTTTCGTGGTGCAGCACATCAAGGCACCGCACATGTGCAAAGTCGTGCAAGAATTTGATGacgatttttatatatatatatataatagaaatcGTGCTTGCCGCTCCACGGGCCTCATGGAAGGCCGGAATGTTTTAACTTTCGTCCCGATGTTTCAATGGGGTGAGCAGGCTGCCTGCCATAGAAGCACTGTGAGGCCGCCCCCTGGTGGTGTGAAAGACTAAAAGCCATGCACCCATGTGATCTGGGTGTGCATGACAGGACAGACTACAAACACAGCACCTAGAACATACTGCAGCTTCAACAGACATAggtccacccccccacccccaaaaaactaGCAACCCTCTGCTACTGTACTTTTTCCATAAAACTTTTAAATAGAAACAATCCTAAGTGTGTAAACATCGTaacattttttgtctttcataATAAGGTACAAGTtcatacagacaaacaaacgagaaaagaaaaaaaaactaacataaaaCCAAAGTGCCTTTGAATATTTACAAGTTCTCCAGATGTGTAAATCACCCAGTAGATAGAAAACATAGGAATTCATctcatatgtattcatttaatattatatatgtatatattttttaattcctgtcCTGACCTTAATGTGCAAATTATCCTGcaaattatgttattgttttcagttggttttattaatacatgcaATGACAAAGATACACGACGTCCAGGGTTTAAGGCCAGTCAGATAGAAATGCCCTATGCGAGAATAACACTGTAGGTATTGTGCCTAAACCAAGCGACACTTCAGCTGTCTAAGATGTATTTGAGAGTGATTGTGTTGTGCttatccaattattattattatttatttttaactctttCATGTTCACAAATTGGCagcacccccccctccctgttTTACAACATGAAAGGAGCATCATTTGGTTCCTATTTGTGCCAATGGATACTAATCTGATAAGCTTGGAATGTCTTTGAACTAAGGGTTATGGTCgaagtaaaaattaaaaaaacagacaaaaacaacaaaaaaaaatctagaaaattAATAGTAAGAGCGCAGcagtgttttaaaagaaaaacaggttttaCGTGTTCGTAGTCTCAGTATAGGTTTATAAGCCCTGCGGAGGACTTGATCTGGGGATATTATCGGGCCTAACTGCTATGACCTGCTGCCTCTGTGGAGCTCTGGGAGGGGTTTGGGAAATAACAGTGTGTGTGCCGGGATGTGGCCTCTCCACTGAGGGGTCAACTTCCGGCCTTCACCAATAAAACGTTTTGCGCAGCAACTGTATTTCAGCCACCGCATGGAAGACGAAGAGCAAAAAGTCCcaggaaaaaatgaaagaattgaTGTCGCATAGTTGGAGTGATGAGATGGCAACCCGGCTGTACACGGTGTTGTTTGCAAATAGACTAAAATATTTGCTGCAACAAatgagtggggaaaaaagaaagaaggaaagaaggaaaaaaaacaactccctACTGTTCTTTGTGAACAGggacattttacaataataccCCCACTCAACCCCCCACCCTCTGCCTACTACAAGCAAAAGGCAGATAGCACCCTTCCTTTAATAATATACAGGGCTGAGATGCAGGTTAAAGGAGTGGCCAGCAGTGTGACTATCTGTACTCTCATGGGAGACACAGAGGAGGTGAATCAGGGAGGCTGAGAAGAGACCAATGAGAGCCTAATGAGAGCAGCTATCTCTGTCAGCCCACAGCGCCCCGGAAGTTACAGATTTTTCGCACCCGGTACCAAATTAAAACACCATCGAAGCCCCATCTGGAGAGTGAGGccacatgtttttaatgtagctTCATTCTCTAATTTAAAATTTCAAtggattgattttaatttattttactcaaAGTTAATGATGGGCCTGACAGTAACGGGGATTGAGATGAGGACTGCGCTGCAGCCGAATCTCATCTGCAGCCACGCAGATGCCCCTTGTGTCCATGTACCGGTACACAACGTGGGTTTTTGGCTGAGTTGCAGGTGACACGTCTCTCCCTCTTGTCCCTTGTACTGTACATTCTGGAATCTTTGGAGGGCTGTTTGGGATAAGCTCTCTGTTTGCCTGAAAGCCAAAATGGACACAATGGGTTTTAACAAACTTCAAGTGCATTATAGATATATTTAGGAGCCAGGGAGCAGGAGTAGGCCAAGTTGGGGCCTAAACTTCAGTATCTACAGTTGGCTACCTTGGCACTGGCTTCCAGTCAACTCTTCCACTGAAGGACTCTCATCCAACTAGAATGTTAACTGCTTATTTGGCCCTTACATATTTTAGCGTCACTGATGTTGCAATGGATTAGAATGGAAGGCCTGTTCTGCATGCGTCTCAGTTCCAGGatctgcagccctggtcctggagagctgggGGAGTCTTCTGGTTTTCACCCCAGCTGAGCACTGTATGACCTGATCAGACCAATTCCCTCAGTGTCTCCCCCAACCCAGTGCTCAGGCCACACTGTGTGGTGCAATCTGTATTCCAGCCAAGCtgttaattacttaactgaactaataacCTAATTCCAAGTCAAGGAAATGGGAACTtgatcaatttatatttttcatcataagTGTACTtgatcaatatatatttttcatcataagAAATATTCAACTTTTTAACATCTGCATCTGCAAACAATTTTAGAAAAAGGCAGAACTGAGACATTTTACTCAGCCGGAACCAAATCGCAGAAGAGACACTGAGAACTGGCTTTGGGGAAATTTGTGAAATTGGTTGAACACAAGTTATCCAGGCGTCTCTGCTGCTTTCTAACCCGCTCCCCTTCTGACACAAGACTGCAgctgtccaggaccagggctggttGAATTTACACATCCATCCCTCCT

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65263 True 7178 lncRNA 0.41 2 13823113 13830315

Neighbor

gene id symbol gene type direction distance location
AMCG00008879 NA coding downstream 51723 13737882 ~ 13771390 (-)
AMCG00008878 NA coding downstream 89075 13720710 ~ 13734038 (-)
AMCG00008872 NA coding downstream 179738 13638657 ~ 13643375 (-)
AMCG00008873 NA coding downstream 214165 13585087 ~ 13608948 (-)
AMCG00008874 NA coding downstream 238282 13580416 ~ 13584831 (-)
AMCG00008882 ddx23 coding upstream 892 13831207 ~ 13839926 (-)
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding upstream 36339 13866654 ~ 13881491 (-)
AMCG00008887 LOC103368342,LOC104967533,LOC101064836 coding upstream 60965 13891280 ~ 13897417 (-)
AMCG00008891 neurod4,LOC105013535,LOC106567036 coding upstream 187035 14017350 ~ 14021503 (-)
AMCG00008890 NA coding upstream 211458 14041773 ~ 14042907 (-)
G52131 NA non-coding downstream 46184 13771560 ~ 13776929 (-)
G52019 NA non-coding downstream 367261 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 383487 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 522830 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 565494 13253853 ~ 13257619 (-)
G52214 NA non-coding upstream 175412 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 296924 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 441659 14271974 ~ 14275087 (-)
G52314 LOC105897838 non-coding upstream 530618 14360933 ~ 14365179 (-)
G52308 NA non-coding upstream 543276 14373591 ~ 14378330 (-)
G52099 NA other downstream 136376 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 497886 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 513688 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 561291 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 638757 13135732 ~ 13184356 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 108136 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 863515 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1010392 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1202032 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1639359 15469674 ~ 15505517 (-)

Expression


Co-expression Network