G52296


Basic Information

Item Value
gene id G52296
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14271974 ~ 14275087 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65441
CCACTATTTACAGATCAATTCTACAGTTCTCTAAAATCACCCCCCCACTtccaaaaagtaaaataaaaggcCAAAATTCAATGCTTTGGCAATCAACACAAgcttgtatacatttttttttttttttttttttttacaatcttAAACACTTTGAATGAGggtagaattattattaatcaagtACAATGCTTCACTTAGTTTTGACAGTTTCCACACACTGTAAGTAACACAATGAACAAGTACAACACAACTCACTGCATTCTAAAGGATGCATCTGTTCTGCTTGCCTggtgtgtatttttgttgtaaCACTGCTCTTctcacacacccccccccctcacagTTAGAACATTCAAAACTAGAGTGAAATTGGGGCTCAGAGTGAATCAGGCCTGAGATTGAAATAAGGCTATGTTCTAGAATTTGGGACAGGGTTCCAGAACTATAATACATTCCATCaatgagctactgaacacactgcagcccagcactgagacactgaaaaATGAGTACTGTAACAGGAACATGTTCTgcacaatattaataaacagtGCATAGGCCTTGGCCTTATTTAAAGCATCATGTTTATTCAGATTTTAAGAAGACAAGGTTACCCCCATCCCATCCCCTACCCCACTTGACCCCATCAAATCCCACTACACAAAGTTcatccaataaaataaaatcctatgTAAatacagcaagcctgtttttttgttttaacttattaaaaaaaaaaaaaaattctctgTGATTAAACAAGTtagtgcatttcatttaaattcattataCAAGGTCACTAGCTGCTCTTTAGGCATTACTCAAAGAAgaggtggggggcggaaaaaaaaaaaaaaaaaaaaaaaatgaagtgattAGGCCCTGGTCCCAAACTCTTCCCCTAATCAGGGAGGAAGGGGCATGGTGCTGGGGTCAGGGTCTGCTTATACACCGTAATCATCCATTTAGCTCTCTTAACCCCTCCCACATAGGTGTAAATCTCACCCAGATACAGAGACATACACATGTGCACAGACAAATACAcatggacagacacacaaacacactcacacaaaaaaagctaacaaaaacaaaagctagGGGGGGTTTGGGTTCATGCAGTTGGGCCCAGTTCTGGCCCGCTCTGGGCTCCGAGCCTCAGAACCACATGTTTATAGAGCAGTGCTGTCAATgtgccactagagggcagcagtAGCAGCCCTGCACTAAGCCTGTGAGGGCGGGGGATTATTCGGGTTCACTCGTCATTCAAACAATTAGCCAAATTATAACTTATTATGATACCAATGAACCCACATTTCAAAACTGCTAATTTAAATCCATAATTctctattaaagaaaaaaaaatgtatgtgtatataaactaTTCAAGTGGTCAGAACCATTCTTTTGTCTGATCCCCCCAACAACCCAATCACCCAACCACCCCCCAACGCCTCACTTGATACACACATCAACAACTTAAAGTTTGAGCTGCACAGGACAGAGCTGAGTACAGCTGGAAACTCCAGCAGACAAACAGCACAGCCATCCCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65441 True 1558 lncRNA 0.40 2 14271974 14275087

Neighbor

gene id symbol gene type direction distance location
AMCG00008890 NA coding downstream 229067 14041773 ~ 14042907 (-)
AMCG00008891 neurod4,LOC105013535,LOC106567036 coding downstream 250471 14017350 ~ 14021503 (-)
AMCG00008887 LOC103368342,LOC104967533,LOC101064836 coding downstream 374557 13891280 ~ 13897417 (-)
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding downstream 390483 13866654 ~ 13881491 (-)
AMCG00008882 ddx23 coding downstream 432048 13831207 ~ 13839926 (-)
AMCG00008904 NA coding upstream 109482 14384569 ~ 14389388 (-)
AMCG00008907 NA coding upstream 115102 14390189 ~ 14393018 (-)
AMCG00008911 NA coding upstream 217083 14492170 ~ 14495264 (-)
AMCG00008915 LOC106583168 coding upstream 295365 14570452 ~ 14587950 (-)
AMCG00008916 NA coding upstream 330889 14605976 ~ 14612227 (-)
G52233 LOC101154678 non-coding downstream 144473 14127239 ~ 14127501 (-)
G52214 NA non-coding downstream 265535 14005727 ~ 14006439 (-)
G52157 NA non-coding downstream 441659 13823113 ~ 13830315 (-)
G52131 NA non-coding downstream 495045 13771560 ~ 13776929 (-)
G52019 NA non-coding downstream 816122 13373383 ~ 13455852 (-)
G52314 LOC105897838 non-coding upstream 85846 14360933 ~ 14365179 (-)
G52308 NA non-coding upstream 98504 14373591 ~ 14378330 (-)
G52355 NA non-coding upstream 238790 14513877 ~ 14514078 (-)
G52362 NA non-coding upstream 266979 14542066 ~ 14542499 (-)
G52363 NA non-coding upstream 267469 14542556 ~ 14545750 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 288081 13938451 ~ 13983893 (-)
G52099 NA other downstream 585237 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 946747 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 962549 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 1010152 13257698 ~ 13261822 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 418743 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 565620 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 757260 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1194587 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 1328738 15603825 ~ 15639130 (-)

Expression


Co-expression Network