G52377 (LOC108235766,LOC107384431,LOC106518056)


Basic Information

Item Value
gene id G52377
gene name LOC108235766,LOC107384431,LOC106518056
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14576436 ~ 14576682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65545
CAGTGCTCCGGTCATGAACACAGAACAGCCCATCAGTACAAAGATTAGCAAGCCGGTCAGCCTCTGCTCACGGATGCCCAGGAATTTGGGCTGCTCCCCGGGGGCCGAGCTCTCTGACTCCAACTTCAGGCTGTTGACGTGAGAGATGGAGAGCACAGTCGCAGCCACGAACCATGGCAGCCCCATGATCGAACACACTCCCAGCATCACCCCCACCATCAGCAGGTCCAAGTGGTACCCACAGCCC

Function

NR:

description
PREDICTED: electroneutral sodium bicarbonate exchanger 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65545 True 247 lncRNA 0.59 1 14576436 14576682

Neighbor

gene id symbol gene type direction distance location
AMCG00008909 NA coding upstream 83857 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 98322 14467759 ~ 14478114 (+)
AMCG00008906 LOC108433193,LOC104932970 coding upstream 120636 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 161701 14414349 ~ 14414735 (+)
AMCG00008902 NA coding upstream 198321 14366961 ~ 14378115 (+)
AMCG00008912 NA coding downstream 55835 14632517 ~ 14649949 (+)
AMCG00008921 NA coding downstream 246621 14823303 ~ 14832837 (+)
AMCG00008928 NA coding downstream 373198 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 456052 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 474013 15050695 ~ 15065008 (+)
G52374 NA non-coding upstream 13726 14562445 ~ 14562710 (+)
G52372 NA non-coding upstream 15187 14560719 ~ 14561249 (+)
G52364 NA non-coding upstream 23195 14552896 ~ 14553241 (+)
G52361 NA non-coding upstream 30682 14542639 ~ 14545754 (+)
G52234 NA non-coding upstream 447745 14128487 ~ 14128691 (+)
G52378 NA non-coding downstream 155 14576837 ~ 14577055 (+)
G52379 LOC108440675,LOC107667363,LOC107748408,LOC107673578 non-coding downstream 1409 14578091 ~ 14578322 (+)
G52380 NA non-coding downstream 6411 14583093 ~ 14583292 (+)
G52382 NA non-coding downstream 21285 14597967 ~ 14598452 (+)
G52383 NA non-coding downstream 29800 14606482 ~ 14606693 (+)
AMCG00008910 NA other upstream 34188 14527818 ~ 14542248 (+)
G52349 NA other upstream 93181 14481921 ~ 14483255 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1267006 13306495 ~ 13309430 (+)
G51939 NA other upstream 1318796 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1351490 13222320 ~ 13224946 (+)
AMCG00008917 smarcc2 other downstream 161767 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 206361 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 230615 14807297 ~ 14811757 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 405891 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 1279542 15856224 ~ 15863670 (+)

Expression


Co-expression Network