G52387


Basic Information

Item Value
gene id G52387
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14597967 ~ 14598418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65555
aaaaaacttaactttaaataaacaagtgcacaaaacaacaaaacaaacgtgattaaagcaaaactgctaaccaacataaaagtcaaatacattgaaaataactgaaaatgcattggacaaaataaagaaacaattaaaaaggtaaaaataaaaaacaaacaaaaaaggtccaatgcatttaaaattaaatccaaaacggacaatgtatttgacaaaaaaatataacaaaactaaaccaaaaaacccctaaacaatttgtgttttaaaaccaactaaatctttaaaaacagttaaaaattcattcttaaaagtcattttaaaaacaatcattcataaaatggttaaaagatcttggactcgggctccagcagggggaactgaccATCCCCGGAGGTGatcatcatgggatcctgagctcccccagatcttgtatatgCCAGTTCTTATAGGCT

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65555 True 452 lncRNA 0.30 1 14597967 14598418

Neighbor

gene id symbol gene type direction distance location
AMCG00008915 LOC106583168 coding downstream 10017 14570452 ~ 14587950 (-)
AMCG00008911 NA coding downstream 102703 14492170 ~ 14495264 (-)
AMCG00008907 NA coding downstream 204949 14390189 ~ 14393018 (-)
AMCG00008904 NA coding downstream 208579 14384569 ~ 14389388 (-)
AMCG00008890 NA coding downstream 555060 14041773 ~ 14042907 (-)
AMCG00008916 NA coding upstream 7558 14605976 ~ 14612227 (-)
AMCG00008914 LOC105897308,LOC103368323,LOC101065051 coding upstream 55032 14653450 ~ 14666770 (-)
AMCG00008913 NA coding upstream 73023 14671441 ~ 14681624 (-)
AMCG00008924 myl6b,zgc:153867,LOC105013534,LOC106950810 coding upstream 158221 14756639 ~ 14765251 (-)
AMCG00008925 NA coding upstream 168538 14766956 ~ 14770430 (-)
G52363 NA non-coding downstream 52217 14542556 ~ 14545750 (-)
G52362 NA non-coding downstream 55468 14542066 ~ 14542499 (-)
G52355 NA non-coding downstream 83889 14513877 ~ 14514078 (-)
G52308 NA non-coding downstream 219637 14373591 ~ 14378330 (-)
G52314 LOC105897838 non-coding downstream 232788 14360933 ~ 14365179 (-)
G52421 NA non-coding upstream 133705 14732123 ~ 14733797 (-)
G52518 NA non-coding upstream 396152 14994570 ~ 15006197 (-)
G52513 NA non-coding upstream 396498 14994916 ~ 15023128 (-)
G52594 NA non-coding upstream 570904 15169322 ~ 15172366 (-)
G52621 NA non-coding upstream 639637 15238055 ~ 15239115 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 614074 13938451 ~ 13983893 (-)
G52099 NA other downstream 911230 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 1272740 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 1288542 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 1336145 13257698 ~ 13261822 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 95412 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 242289 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 433929 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 871256 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 1005407 15603825 ~ 15639130 (-)

Expression


Co-expression Network