G52421


Basic Information

Item Value
gene id G52421
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14732123 ~ 14733797 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65593
CTGCCTCAGTAccccttttttctttattttctgtattctttctttgttttaaattatattcctAAATCTACCTCCATTACTCCATCTCtctttcacatacacacacacatactcacaagcacacacacaaacactcacacacacacacacacacacgcacacacacacacacacacacacacactcactcaggcACAGGtttctcagttttattaaaaaggtttaaattgtttaacaaaacaagatgaaagacagagagggagggagagaggagcagTGCGGTGTCTCCGGCTCGCTCCACTGCCTGCCTGACAAACAGGGGTCCctgaagagagagggaaagaggaaaagaaagaaactgagagagggagagatggaaggaAAGGGAAATAGAGAGACAAAgttaaagagagaaagaaaaggaaattgaggctaaaagggagagaaagaggagaagaGAAAAGGAGGGTGAGCGGGTGTTGCATGATTATTAAATACATCCATCTCCCTCTGAGCCCAGCCCCCTCCTCCCACCCTCTGCTTGTCTCTCGCTCCTTCCCTATCTTACTCTCTCTGTAGGATGCTGTGTTATACATTTCCAGTACGGATCTGGCTGTGATTGTAAAGAGCGAGTCTCCGGGGGGGCTGGCGTCGGGGTAGTTATGGAGGAAATGATAGACAGGACAATCCCTGGGCCCAGGAACACACCTGCGCAGACTTTCACTGTGCCTCCCAGTGTCTCTTCGCCAGCTTCTCTATCTTTGTCTCCATGTCTCTCTCCtatgctctcactctctctccctgagtGCACTCATGGCAAGTGGCCATCACGGGGCGCTGTGGCAGGAGCCGAGACTGACAGGGAGCCCCCACTCACAGGTATgaaattaataagtaaatataataaatgatgTATCCTCTAAAGGGATATTACCCCCCCAAGGGCAAGTGAGGTTTGGTCTTGGAGAAAGGAGGTTGGAGGTAGATGGCGAGAGTGGGGATGGGGGTGGAGGGGCAGGGCAGAGAAGAGAGACTGAAGGAGTTGCAATGCAACACCTACAGAGCCGGATTACTGGGCTGCGTCACTGTCTGAATCAGAGACCCCTGCACTTACGCAGTCTCTGCTGCTTGCTGGTCATCAGCAGaggattttttatatatttattttatttctgtttttgagtAACGGTGTAGGCTGGAGGATGAAGCTCTGCTCCTGTAAGCAGGGAGATTAGACCCTGGCTCGCTCTATGATCTCTGCCCACTCTGTGGGATCAGTGGCAGCTTTGTGGCGCAGCACTCCTGCCCGACGGGATGTGAGCAGCACAGATGGTCAAAAACAATTTCTCCTCGCCATTGATTGGCActgaaaagcaagaaaaagaaaggtcaGGGTGCAATTCTGTAATATTGAGAGACTGCTGCCTGTATTGTAGCTACTACTTGTTGGCAAaagcaggggtctccagccctggtcctggagaagtacagtacagtacagaaggtgtgggggtggggtgaaacactgctggtgggggggggggggggggggggggggggggggggggctgtggcTTGGCGCTCCGGTGAGCAAGTCTACAACTGAGTGCCAGCCAGCCGTGTTTACACACAGCAGTACATGCTGTTTATTAATCACAGGCTCGTCAAGTGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65593 True 1675 lncRNA 0.50 1 14732123 14733797

Neighbor

gene id symbol gene type direction distance location
AMCG00008913 NA coding downstream 50499 14671441 ~ 14681624 (-)
AMCG00008914 LOC105897308,LOC103368323,LOC101065051 coding downstream 65353 14653450 ~ 14666770 (-)
AMCG00008916 NA coding downstream 119896 14605976 ~ 14612227 (-)
AMCG00008915 LOC106583168 coding downstream 144173 14570452 ~ 14587950 (-)
AMCG00008911 NA coding downstream 236859 14492170 ~ 14495264 (-)
AMCG00008924 myl6b,zgc:153867,LOC105013534,LOC106950810 coding upstream 22842 14756639 ~ 14765251 (-)
AMCG00008925 NA coding upstream 33159 14766956 ~ 14770430 (-)
AMCG00008926 NA coding upstream 62553 14796350 ~ 14797477 (-)
AMCG00008927 NA coding upstream 66972 14800769 ~ 14805666 (-)
AMCG00008922 chmp2a,bc2,LOC107552765,LOC107582752,LOC107727322,LOC106589279 coding upstream 78077 14811874 ~ 14818996 (-)
G52387 NA non-coding downstream 133705 14597967 ~ 14598418 (-)
G52363 NA non-coding downstream 186373 14542556 ~ 14545750 (-)
G52362 NA non-coding downstream 189624 14542066 ~ 14542499 (-)
G52355 NA non-coding downstream 218045 14513877 ~ 14514078 (-)
G52308 NA non-coding downstream 353793 14373591 ~ 14378330 (-)
G52518 NA non-coding upstream 260773 14994570 ~ 15006197 (-)
G52513 NA non-coding upstream 261119 14994916 ~ 15023128 (-)
G52594 NA non-coding upstream 435525 15169322 ~ 15172366 (-)
G52621 NA non-coding upstream 504258 15238055 ~ 15239115 (-)
G52666 NA non-coding upstream 547099 15280896 ~ 15284268 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 16801 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 748230 13938451 ~ 13983893 (-)
G52099 NA other downstream 1045386 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 1406896 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 1422698 13307422 ~ 13309425 (-)
AMCG00008923 NA other upstream 106910 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 298550 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 735877 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 870028 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 1100243 15834040 ~ 15851810 (-)

Expression


Co-expression Network