G52430


Basic Information

Item Value
gene id G52430
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14766211 ~ 14831477 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65609
ctTTTAGTTTCCCCACCCACAATGAAGACAATACagattcaatatttttctttattccaGTAAAGAGTAGCATAATCCTTCTCCAGTTCCTGCAGCTTTTAGTTCTGCCCTAGTAAGAGTGCTGATGTACAGAAGTCAGTGAATACAGAAATCATTTAACAGACCGTAAATGCAGTTTCACAATCAACAGGTAAAGTTACACTGCAGTTAAGCTAATGCCGTTACAAGATGTTTTAATTATCTGTAGGGATCTAACAATCACTTAAACCACAAACCCTACGGTTTGCTCTCACAGTTTGGAGACAGCTTTCTTCTTTCATAGGTACGAAAGAgctcacactacacactgtaaCCATATTTATTaagaataatatatacaaacattagTTTCTTTCTTAATACGCTGACATTAATCTTGCCTTGCCAATTAACCAAATTAATAGGGATCTCTGGggaaaacccccaaaaaataattgtgagaTTCCATTCAGATCCATTAAAACTGCAGAGCTGGAAACGCCAGCAGCTCTATCCATGTGATCTGGACCTCTGCATATCAAGCACAGAGACGATGTACTGGGTGGACTGGAGGCAGGCTGATCAGGATCAGCACTTCATCATGGAATTCAGTTCTTATCATTCAGATCACCACTAATTAAGGTGTCTCATAGGTCCATAATCTTCAAGGTAGAAACAGTCCATGACTGTTTGGAATTGATCCATTGAGAAGCCAGCAGGGGGAGCTCTAGAGCTCACCCTCCCCGCACTCAAAGCGCACAAAGTCCAGCACACGCACATCCTGGTCCTGCAGGTACTGCCCCACAGTGCGACTGGGGTCAGACAGGAAGCTCTGGGCCACCAGCCGCGTCTCGGTGTCTCCGCAGGGAAGCTCGTCTAGTGACCCCAGAGAGAGCGGTGCCTCTCCAACCACGTGCTGGGCCAGCTTCCGgccctcctccacccccccacctctgtaCACCACCATTGCACCATACCGGCCTAGCAGGGCCCCCCCAGGGGAGGCTGGCCCCCCGCCGTGGACATACCCTCCGACATGGCAGTCTGGCGGTACTGAAAGCACCACCGCACGACGCAAAGTGAGGTTCTCTCCCAGCCGGCCTGAggagcaacacaacacagtgttACATGTTTAATAGCTGGTAGAGATTGACCACGTTTTCCCATTCCTTGAagcaaaatgcatgaaaatcaAGAATTTCCACACCTGTCTCATAGGGGGCTCTAGTATTtccaagttattttttttttttacaaagcagCTTGCTTTCTGGGTTAGgcagttaaatgttaaattgtttcCTTATTTTTGTGTGCAGATTTCTGATGGTCCAGGAACAGGCCCAAAGGCAAGGTCG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU65609 True 1376 lncRNA 0.47 2 14766211 14831477

Neighbor

gene id symbol gene type direction distance location
AMCG00008912 NA coding upstream 116262 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 273632 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 288097 14467759 ~ 14478114 (+)
AMCG00008906 LOC108433193,LOC104932970 coding upstream 310411 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 351476 14414349 ~ 14414735 (+)
AMCG00008928 NA coding downstream 118403 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 201257 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 219218 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 266689 15098166 ~ 15099180 (+)
AMCG00008935 NA coding downstream 301859 15133336 ~ 15136021 (+)
G52384 NA non-coding upstream 145928 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 159518 14606482 ~ 14606693 (+)
G52382 NA non-coding upstream 167759 14597967 ~ 14598452 (+)
G52380 NA non-coding upstream 182919 14583093 ~ 14583292 (+)
G52379 LOC108440675,LOC107667363,LOC107748408,LOC107673578 non-coding upstream 187889 14578091 ~ 14578322 (+)
G52497 NA non-coding downstream 150646 14982123 ~ 14982509 (+)
G52493 NA non-coding downstream 195241 15026718 ~ 15027582 (+)
G52580 NA non-coding downstream 293110 15124587 ~ 15125501 (+)
G52614 NA non-coding downstream 393568 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 405225 15236702 ~ 15236924 (+)
AMCG00008917 smarcc2 other upstream 11567 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 223963 14527818 ~ 14542248 (+)
G52349 NA other upstream 282956 14481921 ~ 14483255 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1456781 13306495 ~ 13309430 (+)
G51939 NA other upstream 1508571 13253814 ~ 13257640 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 151096 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 1024747 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 1063953 15895430 ~ 15910151 (+)
G52942 NA other downstream 1530625 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1748386 16579863 ~ 16587381 (+)

Expression


Co-expression Network