G52439 (chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279)


Basic Information

Item Value
gene id G52439
gene name chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14813495 ~ 14814414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65621
cCCACTCTCCATTTTACACAAAGTTACTGTGTGTACTGACAACCAGATATTACACtggtattttatataatattacaatatagttttaattaatgtaaatcccCCCATATAGTAGTGTTGGAGCTGACAGACCCTACCGAGCCCTAATGAAACAGACAGCCCCAGTGTACACAGGAGTCGGACAGGgtgtgcacacagacacaaagagagaggTTACTACTATGTTTATGCAtctacacactgcactgcactggtctTTCCatcaatccctctctcccttcctagGTCTCTCAcatctctctttAGGTTGTTCAGTCGCTCCTCCAGGTCAGCATCAGCGTCAGCGAGGGCAGCGGTTGGCTCGGCCTTCTTCCCCGCAGCAACGGAGAGATTGCCCCCAGTAGAAGGGAGGTTTGACAGTTCATCTGACAGATTCAGTCCCAGTTCATCCAGAACCTGTGAAACCACAGcatcactctcctCTTCATCATCCTCATCTCCCATGGCATCGTCGATGGCGTCATTCATCATCTCCTCCTTCATGTCCATGATCTCGCTCTGCCGCTCGAACTCCATCATGATCTTCTGGATCTGAG

Function

symbol description
chmp2a Predicted to be involved in several processes, including endosome transport via multivesicular body sorting pathway; exit from mitosis; and late endosome to vacuole transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A).

NR:

description
charged multivesicular body protein 2a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65621 True 596 lncRNA 0.48 4 14813495 14814414

Neighbor

gene id symbol gene type direction distance location
AMCG00008912 NA coding upstream 163546 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 320916 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 335381 14467759 ~ 14478114 (+)
AMCG00008906 LOC108433193,LOC104932970 coding upstream 357695 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 398760 14414349 ~ 14414735 (+)
AMCG00008921 NA coding downstream 8889 14823303 ~ 14832837 (+)
AMCG00008928 NA coding downstream 135466 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 218320 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 236281 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 283752 15098166 ~ 15099180 (+)
G52384 NA non-coding upstream 193212 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 206802 14606482 ~ 14606693 (+)
G52382 NA non-coding upstream 215043 14597967 ~ 14598452 (+)
G52380 NA non-coding upstream 230203 14583093 ~ 14583292 (+)
G52379 LOC108440675,LOC107667363,LOC107748408,LOC107673578 non-coding upstream 235173 14578091 ~ 14578322 (+)
G52497 NA non-coding downstream 167709 14982123 ~ 14982509 (+)
G52493 NA non-coding downstream 212304 15026718 ~ 15027582 (+)
G52580 NA non-coding downstream 310173 15124587 ~ 15125501 (+)
G52614 NA non-coding downstream 410631 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 422288 15236702 ~ 15236924 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1738 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 18311 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 58851 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 271247 14527818 ~ 14542248 (+)
G52349 NA other upstream 330240 14481921 ~ 14483255 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 168159 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 1041810 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 1081016 15895430 ~ 15910151 (+)
G52942 NA other downstream 1547688 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1765449 16579863 ~ 16587381 (+)

Expression


Co-expression Network