G52493


Basic Information

Item Value
gene id G52493
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15026718 ~ 15027582 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65692
atacccaaacaaaacaagtgcatttaaaatcaactaattctttaaaaagttaaaattcattttttaaaagtcattttttaaaaccaaggttaaaagatcttggactcgggctccagcagggggagatggccgtccccggaggtgggtcccatcacgggatcctgagctcccccagatcttgtatttgcccCTCTGACGGACCTCTagattgacatagtccctaattagtaccatgcccctccgcgcgatgacaattGGGTCCAGCGCCTGCTTGTTAAATAggcagatgttccgtccctcccacagggcctgtttcactgcgcagacgacacaccaccagcacctcagggttgaaGATGTCAGTCCCCTGGCTGGtccatacaggatctgctgggcggtcgcccgcacaggaacggcaaacctgtggaggaacggagaaaacaggagccagaccctgcaggcggaggggcaatccctaaagatgtgaacctccgtctccttccccaggcaacccttgtaggggcagatgtcatatggggctaggccccttctgtgcatgaacactcgggtggggagacaccgactcacagccatccaggagacatctttctgcgtatttgtgaggcaaacgtgcgtagtgttagcccagataaactgGCAGGTTTCtagagggaaatcttctatccggctggtctcctgggtagatctcatctggctacagatggtcttataatcccaggaggccagcacgactttatggaggcctacttcgagcaCAAAGGcacggagcgccctgtagaacggcggggaatcccacgagtgcggcctggtgttatccatggcgcagaggctgAATGGTCTCAGN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65692 True 865 lncRNA 0.53 1 15026718 15027582

Neighbor

gene id symbol gene type direction distance location
AMCG00008928 NA coding upstream 46965 14949880 ~ 14979753 (+)
AMCG00008921 NA coding upstream 193881 14823303 ~ 14832837 (+)
AMCG00008912 NA coding upstream 376769 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 534139 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 548604 14467759 ~ 14478114 (+)
AMCG00008930 NA coding downstream 5152 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 23113 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 70584 15098166 ~ 15099180 (+)
AMCG00008935 NA coding downstream 105754 15133336 ~ 15136021 (+)
AMCG00008941 LOC107560742,LOC106601920 coding downstream 155206 15182788 ~ 15202953 (+)
G52497 NA non-coding upstream 44209 14982123 ~ 14982509 (+)
G52430 NA non-coding upstream 195241 14766211 ~ 14831477 (+)
G52439 chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279 non-coding upstream 212304 14813495 ~ 14814414 (+)
G52384 NA non-coding upstream 406435 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 420025 14606482 ~ 14606693 (+)
G52580 NA non-coding downstream 97005 15124587 ~ 15125501 (+)
G52614 NA non-coding downstream 197463 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 209120 15236702 ~ 15236924 (+)
G52628 NA non-coding downstream 219316 15246898 ~ 15247191 (+)
G52632 NA non-coding downstream 255118 15282700 ~ 15283545 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 5872 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 214961 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 231534 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 272074 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 484470 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 828642 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 867848 15895430 ~ 15910151 (+)
G52942 NA other downstream 1334520 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1552281 16579863 ~ 16587381 (+)
G53028 NA other downstream 1644921 16672503 ~ 16673542 (+)

Expression


Co-expression Network