G52580


Basic Information

Item Value
gene id G52580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15124587 ~ 15125501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65797
cagtaacccgctgccacaacttgtagctctgttgccagaactgaaaccggaaaccaactaagtctttgccggcaacagaagagttaaactgggagaaggagattgtgccgtatgaagaattcttttaaaggactttattaagtaaagaactttagaaactgcacatgCCCGCCtctacccatctgatcagtggagttttacagctggacaattgactaagtcgactgcaatacgtaagtgttcagtcatttaaatagctattgagtcttaagaaacttgacccttggaaatgaacagggccctgctttcctcaaagactttgtcttcaagtaactatagtggaaaaccctgcttgcaaagaagattttgtgcacaaccttggaaccttcaaaccagtggaaaatctatttggaaaagactctttcgcaaaaccccaacttccaggtgcatcgactgagtggaagttattggacaaagccgaaccggactgcctttgttccaaaccacacggacctcgtgccgtgtgtttttatttgagcccgaagacagagaggcctctctgcgacgaagttcagaaattatataatctttctcggcacccaaacgtaaatgagactgatatatgtaacgagaagttatttgacttaaatactaacctgcattagttatttaatgtccgactaacaatactaatgagagactcgccttcgtcttactaaccggtattgtagtcaatgtgtttgtaattttgtgtaatgctttgtgtgttatcatatgtgattccatgttctttgatttggtcacggaaatGATGTGTCTTTGAtatgttgatcttgagtgaattttaattagtattttttgtataactagtgtagtgctacattttatcattgtttttaataaatttgagaattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65797 True 915 lncRNA 0.39 1 15124587 15125501

Neighbor

gene id symbol gene type direction distance location
AMCG00008936 NA coding upstream 25407 15098166 ~ 15099180 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding upstream 59579 15050695 ~ 15065008 (+)
AMCG00008930 NA coding upstream 79164 15032734 ~ 15045423 (+)
AMCG00008928 NA coding upstream 144834 14949880 ~ 14979753 (+)
AMCG00008921 NA coding upstream 291750 14823303 ~ 14832837 (+)
AMCG00008935 NA coding downstream 7835 15133336 ~ 15136021 (+)
AMCG00008941 LOC107560742,LOC106601920 coding downstream 57287 15182788 ~ 15202953 (+)
AMCG00008947 LOC107554102,LOC107730730 coding downstream 368227 15493728 ~ 15494128 (+)
AMCG00008946 NA coding downstream 381809 15507310 ~ 15513137 (+)
AMCG00008948 NA coding downstream 392680 15518181 ~ 15519179 (+)
G52493 NA non-coding upstream 97005 15026718 ~ 15027582 (+)
G52497 NA non-coding upstream 142078 14982123 ~ 14982509 (+)
G52430 NA non-coding upstream 293110 14766211 ~ 14831477 (+)
G52439 chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279 non-coding upstream 310173 14813495 ~ 14814414 (+)
G52384 NA non-coding upstream 504304 14619961 ~ 14620283 (+)
G52614 NA non-coding downstream 99544 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 111201 15236702 ~ 15236924 (+)
G52628 NA non-coding downstream 121397 15246898 ~ 15247191 (+)
G52632 NA non-coding downstream 157199 15282700 ~ 15283545 (+)
G52651 NA non-coding downstream 286500 15412001 ~ 15431601 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 103741 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 312830 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 329403 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 369943 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 582339 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 730723 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 769929 15895430 ~ 15910151 (+)
G52942 NA other downstream 1236601 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1454362 16579863 ~ 16587381 (+)
G53028 NA other downstream 1547002 16672503 ~ 16673542 (+)

Expression


Co-expression Network