G52594


Basic Information

Item Value
gene id G52594
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15169322 ~ 15172366 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65816
ataaatataatctattaacatgtctatttttgaaagcattcttactttacagcattttttcacacctgcctaacatttctgcacagtactgtacgtTGACCAattgactggacactacagcacagtctTACTGTTTTTTCCCtgtcctctttctctttctgtatcTGAAAATCTTTATTGGTGAGGTCTACTTGAATGTACTTAAAGCCTCTTAAAAATCCTTGTCCTTAACTGTTTATGGGAATGAGATCTGTCTATAGTTGATAGACCAATTAATTGGACTGTTCGAGAATACATATAGTATTTGGACATTCTAAGAATTCTAATCACCAGTTAATCCACCTAAAAATGTACCATATCATACCATACCAGATCTTATTTGACACCCCGTAGAAGTTTCCTTATGGTTATTATCCCCAGTCCGCTCTTTGGGCTTTGTTCTCTTGCAGTCTCCTGTactttattacatgttttatggGAAtgccaaagtgttttttttgttcttcagttGGGTGGCTTCTATTCTAAATTAATTGATGAGGAAATCCCTTTGGAACCACTCAATTTGCTGCTTGGTGATGACTCAGAGCTTCAATTGTCTGAACAGCATCGTAAAATATGGCTGGCTAGACTAACAGCAGCAAAAAACTGTGAAAGTCCAACACTGGCTCCATCCTCACCACCTACCCTTacagcaatggcttttttttactttaaagatAAAATTTGTTTCGAACATCCTACAGCCAGAATTAAAAGAGCCTAATCCTCTACACTGCTAATTTGGGGGGAAGCAGCAGACAAAGTATCCTTATTGTTGCAAACTGGCACAGTTTGGTGGGGAGGGGGATTATATTaggacataagaacatttacaaatgaaaggaggccattcgacccatcatgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtttatttttgtatgttcccaaattttcagcttcaaccacattgctggggagtttgttccagattgtgataactctctgtgtgaagaaatgtctcctgttttatgTCTTGAATGCCtataagcccaatttccatttgtgtccccagatctgtgtgtccctgcagatctggaaaagctcccctggtttgatgtggtcaatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtccctcagtctctccgagtaggacattcccttcaaacctggaataagtctggttgctctcctctgaactgcctctagagcaacgatatctttcttgaagtgtggagcccagaactgtacacagtataccaaatgaggtctaactagtgcattgtacagtcttaacattacttcccttgttttaaattctacacttttgacaatataccctagcattttgtttgccttttttattgtttccccacattgtttggatggagaaagtccacataaactcctaggtctttctcatgcgttacttaatCTATTCcttacatagtgtaattatagtggacatttttattacctgcatataataccttgcacttgtccacattgaatttcatctgccagttattatccaagtccctttgaataacttgtgctgccgagattgtatctgctgggccatttattttaatatcatctgcaaatttgacaagtttgctaactatcccagagtccagatcattaatatagattagaaaaagcaaaggccctagtacagatccctgtggaactccactaacaacctcactccagttagaagcgactcctctaatcgacaccctctgtttcctatacctcaaccagttcataatccatctacttacattaccctgaatatcTACAGCTTCCAagttgaggatcagtctttggtgtggaaccttatcaaaagctttctgaaaatctaggtatgtcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaacaattctaataaattagtaagacatgatctgcctcgtctaaacccatgttgactatccccaaagaatatttttttcattgagatgctcctctattttctgtctaatcattttctgaaaataatttccataattTCATTAAGCagtgttggaaatataccatttggcccatgtgatttgtttgtgtttaattctgctagtccctttagtaactcctcttcatttatcctgatctctcatAGAGTTTGAATGGATTGATGGTTAACCTGTGGcattgtataattttttaattttgtaaaaacctctgtaaaatactaatttaatctTGTTCATTTATATGAACATACAATAAGTTGTATGTTCTGTTCTGTATAATAATACTcaacaaaataatactaaactgatgtgaaaaaattaaaaaacttttttggCATGGCTATTGAAATTGACAGACATGTCCAGTGCTCAAGAACAGGGCAATgggaaatctctctctctcccagtctctcagtatctctccctccctgtctcactctcgatctctctccctctccccttctgTCTCTCAGGCACAATGTAAACGAGGTTTATTCAAATGTGGGTGTGGACTGTGTCTCCGAGGAGCTGACTCAGCACGCAGACACATGAAAGACTGACTCCATATattgacacacaaatacacactaaCATACtgatagacacacacattaatgtactgatacaaacacacacacacacacttatatactGAAACACACATACTAATATACTGatagacacacaaacacctatATACtgaaacacacgcacactgatgtacacattgatacacacactcacacacgtcCCTCCCAGCCCATACACTCCCATCATAACAGCAGGAGGAAGCTGGTATATGACCCCAGTGTAGAGTGTATAACTGAGCTGCAAATCAGTCACTGTACTCTGTCACATCAAATGCACTCTCTcagtgatattattattacatttcttagcagtcAGTTAGtcaatctaaaatctaaaatgttaaaattg

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65816 True 3045 lncRNA 0.38 1 15169322 15172366

Neighbor

gene id symbol gene type direction distance location
AMCG00008940 NA coding downstream 17117 15136403 ~ 15152205 (-)
AMCG00008938 NA coding downstream 57027 15109783 ~ 15112295 (-)
AMCG00008939 NA coding downstream 82103 15079065 ~ 15087219 (-)
AMCG00008933 syt3,LOC107732896,LOC107563990,LOC107551154 coding downstream 98541 15066924 ~ 15070781 (-)
AMCG00008929 NA coding downstream 276095 14868827 ~ 14893227 (-)
AMCG00008937 NA coding upstream 4250 15176616 ~ 15182566 (-)
AMCG00008942 NA coding upstream 29902 15202268 ~ 15204656 (-)
AMCG00008943 NA coding upstream 129476 15301842 ~ 15328145 (-)
AMCG00008944 NA coding upstream 200179 15372545 ~ 15391050 (-)
AMCG00008945 NA coding upstream 227213 15399579 ~ 15400121 (-)
G52513 NA non-coding downstream 146194 14994916 ~ 15023128 (-)
G52518 NA non-coding downstream 163125 14994570 ~ 15006197 (-)
G52421 NA non-coding downstream 435525 14732123 ~ 14733797 (-)
G52387 NA non-coding downstream 570904 14597967 ~ 14598418 (-)
G52363 NA non-coding downstream 623572 14542556 ~ 14545750 (-)
G52621 NA non-coding upstream 65689 15238055 ~ 15239115 (-)
G52666 NA non-coding upstream 108530 15280896 ~ 15284268 (-)
G52676 NA non-coding upstream 243579 15415945 ~ 15477937 (-)
G52683 NA non-coding upstream 254550 15426916 ~ 15428651 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding upstream 334882 15507248 ~ 15513223 (-)
AMCG00008934 NA other downstream 112116 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 303334 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 454000 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1185429 13938451 ~ 13983893 (-)
G52099 NA other downstream 1482585 13685335 ~ 13686737 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 297308 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 431459 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 661674 15834040 ~ 15851810 (-)
G52782 NA other upstream 664623 15836989 ~ 15837801 (-)
G52834 NA other upstream 785301 15957667 ~ 15963617 (-)

Expression


Co-expression Network