G52628


Basic Information

Item Value
gene id G52628
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15246898 ~ 15247191 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65856
GTTGCAAAGTAACGCGGCCATCTTAGCTGATGAAAGTCTGTCTCTGGTAATGAATGTGGTTCGTAATCCTGAGGGTGGGGCGCTTAGAAGACTGTCGAAATGCTTGAAGAACGACATAATTAGGACCAAGCTCAGGCAATTAGTGGTGAGTTCCAGTGGGGACAATAAGCTCTGTTTTgcatacagtttaataaaactacTCACCCCCGACATGCCTGAACCCCAAGCTCTGCAAGAGGCTTTAATGCTTCATCAGAGTGCCGGCTTAAACTCTCAACAGATGGTGGCCTTTTC

Function

NR:

description
PREDICTED: TAR DNA-binding protein 43

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65856 True 294 lncRNA 0.47 1 15246898 15247191

Neighbor

gene id symbol gene type direction distance location
AMCG00008941 LOC107560742,LOC106601920 coding upstream 43945 15182788 ~ 15202953 (+)
AMCG00008935 NA coding upstream 110877 15133336 ~ 15136021 (+)
AMCG00008936 NA coding upstream 147718 15098166 ~ 15099180 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding upstream 181890 15050695 ~ 15065008 (+)
AMCG00008930 NA coding upstream 201475 15032734 ~ 15045423 (+)
AMCG00008947 LOC107554102,LOC107730730 coding downstream 246537 15493728 ~ 15494128 (+)
AMCG00008946 NA coding downstream 260119 15507310 ~ 15513137 (+)
AMCG00008948 NA coding downstream 270990 15518181 ~ 15519179 (+)
AMCG00008949 NA coding downstream 272438 15519629 ~ 15522296 (+)
AMCG00008955 NA coding downstream 352140 15599331 ~ 15608308 (+)
G52619 NA non-coding upstream 9974 15236702 ~ 15236924 (+)
G52614 NA non-coding upstream 21378 15225045 ~ 15225520 (+)
G52580 NA non-coding upstream 121397 15124587 ~ 15125501 (+)
G52493 NA non-coding upstream 219316 15026718 ~ 15027582 (+)
G52497 NA non-coding upstream 264389 14982123 ~ 14982509 (+)
G52632 NA non-coding downstream 35509 15282700 ~ 15283545 (+)
G52651 NA non-coding downstream 164810 15412001 ~ 15431601 (+)
G52691 NA non-coding downstream 266344 15513535 ~ 15514018 (+)
G52717 NA non-coding downstream 380649 15627840 ~ 15703015 (+)
G52766 NA non-coding downstream 516746 15763937 ~ 15764143 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 226052 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 435141 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 451714 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 492254 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 704650 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 609033 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 648239 15895430 ~ 15910151 (+)
G52942 NA other downstream 1114911 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1332672 16579863 ~ 16587381 (+)
G53028 NA other downstream 1425312 16672503 ~ 16673542 (+)

Expression


Co-expression Network