G52676


Basic Information

Item Value
gene id G52676
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15415945 ~ 15477937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65916
GGAGAAAGAGAGGGATAGAATTCTACTGctcagggagagggagggagggagttaCAAGGATACGAAAGGAGAGGAAGttacagagggagggagaaagatgCATGAGAGGGAGTTTCAAGGAaaaagggatggagagagaCTAGGTTtgggggagggagaaagagggggggttattaagttattaattaataactacCCCATTCTTTAGCTACTTATGTCCCACCTCCCTTCCCTTTGCAGTTCTTCTCATTGTGCTTTGTTCCCCACCCCCATTTATCAGGAGGAAtggtccagtccagtgcagtgttgtTGCTGAAGGTGTAACGGTAGGTAGGTGCTGTGGTGCTTCTGATGCTGGGAAAGTGGATGACTGGAGGAGATGAGATGAGCAGCAAGgcaacCCAGTGTTGTCGTCTCCCTATTTCTCTCCTGCTGTTTTCACACAGGTCTGGAACGCTTCTATCAGCTCCTTACAGTTCTCCTCCCCTTTCGCCttcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65916 True 499 lncRNA 0.49 3 15415945 15477937

Neighbor

gene id symbol gene type direction distance location
AMCG00008945 NA coding downstream 15824 15399579 ~ 15400121 (-)
AMCG00008944 NA coding downstream 24895 15372545 ~ 15391050 (-)
AMCG00008943 NA coding downstream 87800 15301842 ~ 15328145 (-)
AMCG00008942 NA coding downstream 211289 15202268 ~ 15204656 (-)
AMCG00008937 NA coding downstream 233379 15176616 ~ 15182566 (-)
AMCG00008950 NA coding upstream 36697 15514634 ~ 15528761 (-)
AMCG00008956 NA coding upstream 64525 15542462 ~ 15596322 (-)
AMCG00008958 tnnt1,LOC107097207,LOC107689677,LOC108427325 coding upstream 171607 15649544 ~ 15660496 (-)
AMCG00008959 NA coding upstream 189879 15667816 ~ 15685050 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding upstream 310608 15788545 ~ 15801373 (-)
G52666 NA non-coding downstream 131677 15280896 ~ 15284268 (-)
G52621 NA non-coding downstream 176830 15238055 ~ 15239115 (-)
G52594 NA non-coding downstream 243579 15169322 ~ 15172366 (-)
G52513 NA non-coding downstream 392817 14994916 ~ 15023128 (-)
G52518 NA non-coding downstream 409748 14994570 ~ 15006197 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding upstream 29311 15507248 ~ 15513223 (-)
G52774 NA non-coding upstream 343249 15821186 ~ 15822218 (-)
G52793 NA non-coding upstream 381586 15859523 ~ 15863705 (-)
G52794 NA non-coding upstream 387811 15865748 ~ 15865986 (-)
G52808 NA non-coding upstream 427936 15905873 ~ 15908407 (-)
AMCG00008934 NA other downstream 358739 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 549957 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 700623 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1432052 13938451 ~ 13983893 (-)
G52099 NA other downstream 1729208 13685335 ~ 13686737 (-)
AMCG00008957 NA other upstream 125888 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 356103 15834040 ~ 15851810 (-)
G52782 NA other upstream 359052 15836989 ~ 15837801 (-)
G52834 NA other upstream 479730 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 585617 16063554 ~ 16073935 (-)

Expression


Co-expression Network