G52691


Basic Information

Item Value
gene id G52691
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15513535 ~ 15514018 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65931
CTAGCTGAGTGGGCATGGTGTGGTTTGGGTTTTTTCCCAATGCACTACCCAAGCTGCGGTAAATGTCACAAGCTTAcctatttcaaaagctgtgttgcTATATACACATGTTTGTATTAATCCATGTTAcccatttaatttgtaattaaaagcaattcagcttttactgttataaataaacGCATCGAGGGGTAAGCAAACTAGTACAAGACGTATCCAGATGTTGGAGGTTAATGGCCTAATTTACAGATTAAGAAGAGCTATCACTCAAAACAACCTGTAACATTTAAACTTTGTGGATCAACCCTATGTTTATTTTTAccagtatatgaatatgtatatgaaGTAGTTTAAGtatctgtaatgcattttattaatgtattatacctAAGTAATAGGGTAGTCTGACACTACATGATGAGTCCAGTTAACTCCACCTGGCCCTGGCTCTAAATCAGTAATAGGTAAGGTGCTTGGCTGTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65931 True 484 lncRNA 0.36 1 15513535 15514018

Neighbor

gene id symbol gene type direction distance location
AMCG00008946 NA coding upstream 398 15507310 ~ 15513137 (+)
AMCG00008947 LOC107554102,LOC107730730 coding upstream 19407 15493728 ~ 15494128 (+)
AMCG00008941 LOC107560742,LOC106601920 coding upstream 310582 15182788 ~ 15202953 (+)
AMCG00008935 NA coding upstream 377514 15133336 ~ 15136021 (+)
AMCG00008936 NA coding upstream 414355 15098166 ~ 15099180 (+)
AMCG00008948 NA coding downstream 4163 15518181 ~ 15519179 (+)
AMCG00008949 NA coding downstream 5611 15519629 ~ 15522296 (+)
AMCG00008955 NA coding downstream 85313 15599331 ~ 15608308 (+)
AMCG00008953 NA coding downstream 108800 15622818 ~ 15623403 (+)
AMCG00008952 syt1 coding downstream 119705 15633723 ~ 15640935 (+)
G52651 NA non-coding upstream 81934 15412001 ~ 15431601 (+)
G52632 NA non-coding upstream 229990 15282700 ~ 15283545 (+)
G52628 NA non-coding upstream 266344 15246898 ~ 15247191 (+)
G52619 NA non-coding upstream 276611 15236702 ~ 15236924 (+)
G52614 NA non-coding upstream 288015 15225045 ~ 15225520 (+)
G52717 NA non-coding downstream 113822 15627840 ~ 15703015 (+)
G52766 NA non-coding downstream 249919 15763937 ~ 15764143 (+)
G52781 NA non-coding downstream 322967 15836985 ~ 15837809 (+)
G52798 NA non-coding downstream 366039 15880057 ~ 15895419 (+)
G52817 NA non-coding downstream 439030 15953048 ~ 15955372 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 492689 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 701778 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 718351 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 758891 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 971287 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 342206 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 381412 15895430 ~ 15910151 (+)
G52942 NA other downstream 848084 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1065845 16579863 ~ 16587381 (+)
G53028 NA other downstream 1158485 16672503 ~ 16673542 (+)

Expression


Co-expression Network