G52717


Basic Information

Item Value
gene id G52717
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15627840 ~ 15703015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65970
gggaaataagtatttgatcccctatcaatcagcaagatttctggctcttaaagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcaccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaataactgtcagtctccctcggtctggggctccatgcaagatctcaccttgtggactttcaatgatcatgagaacggtgaggaatcagtgcagaaatacatgggaggatcttgttaatgatcacaaggcagctgggaccatagtcaccaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65970 True 439 lncRNA 0.46 3 15627840 15703015

Neighbor

gene id symbol gene type direction distance location
AMCG00008953 NA coding upstream 4437 15622818 ~ 15623403 (+)
AMCG00008955 NA coding upstream 19532 15599331 ~ 15608308 (+)
AMCG00008949 NA coding upstream 105544 15519629 ~ 15522296 (+)
AMCG00008948 NA coding upstream 108661 15518181 ~ 15519179 (+)
AMCG00008946 NA coding upstream 114703 15507310 ~ 15513137 (+)
AMCG00008967 NA coding downstream 228301 15931316 ~ 15931979 (+)
AMCG00008966 NA coding downstream 240142 15943157 ~ 15951025 (+)
AMCG00008970 NA coding downstream 289098 15992113 ~ 15992550 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding downstream 349534 16052549 ~ 16054525 (+)
AMCG00008972 NA coding downstream 423126 16126141 ~ 16134060 (+)
G52691 NA non-coding upstream 113822 15513535 ~ 15514018 (+)
G52651 NA non-coding upstream 196239 15412001 ~ 15431601 (+)
G52632 NA non-coding upstream 344295 15282700 ~ 15283545 (+)
G52628 NA non-coding upstream 380649 15246898 ~ 15247191 (+)
G52619 NA non-coding upstream 390916 15236702 ~ 15236924 (+)
G52766 NA non-coding downstream 60922 15763937 ~ 15764143 (+)
G52781 NA non-coding downstream 133970 15836985 ~ 15837809 (+)
G52798 NA non-coding downstream 177042 15880057 ~ 15895419 (+)
G52817 NA non-coding downstream 250033 15953048 ~ 15955372 (+)
G52856 NA non-coding downstream 358825 16061840 ~ 16063714 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 606994 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 816083 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 832656 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 873196 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 1085592 14527818 ~ 14542248 (+)
AMCG00008960 rps11,rs11 other downstream 153209 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 192415 15895430 ~ 15910151 (+)
G52942 NA other downstream 659087 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 876848 16579863 ~ 16587381 (+)
G53028 NA other downstream 969488 16672503 ~ 16673542 (+)

Expression


Co-expression Network