Gene
RNA
| Item | Value |
|---|---|
| gene id | G52766 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 15763937 ~ 15764143 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: 4F2 cell-surface antigen heavy chain-like isoform X4 |
| id | name | namespace |
|---|---|---|
| GO:0034702 | ion channel complex | cellular_component |
| GO:0034703 | cation channel complex | cellular_component |
| GO:0034704 | calcium channel complex | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0005272 | sodium channel activity | molecular_function |
| GO:0015081 | sodium ion transmembrane transporter activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU66036 | True | 207 | lncRNA | 0.31 | 1 | 15763937 | 15764143 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008954 | NA | coding | upstream | 113664 | 15641691 ~ 15650273 (+) |
| AMCG00008952 | syt1 | coding | upstream | 123002 | 15633723 ~ 15640935 (+) |
| AMCG00008953 | NA | coding | upstream | 140534 | 15622818 ~ 15623403 (+) |
| AMCG00008955 | NA | coding | upstream | 155629 | 15599331 ~ 15608308 (+) |
| AMCG00008949 | NA | coding | upstream | 241641 | 15519629 ~ 15522296 (+) |
| AMCG00008967 | NA | coding | downstream | 167173 | 15931316 ~ 15931979 (+) |
| AMCG00008966 | NA | coding | downstream | 179014 | 15943157 ~ 15951025 (+) |
| AMCG00008970 | NA | coding | downstream | 227970 | 15992113 ~ 15992550 (+) |
| AMCG00008969 | ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 | coding | downstream | 288406 | 16052549 ~ 16054525 (+) |
| AMCG00008972 | NA | coding | downstream | 361998 | 16126141 ~ 16134060 (+) |
| G52717 | NA | non-coding | upstream | 60922 | 15627840 ~ 15703015 (+) |
| G52691 | NA | non-coding | upstream | 249919 | 15513535 ~ 15514018 (+) |
| G52651 | NA | non-coding | upstream | 332336 | 15412001 ~ 15431601 (+) |
| G52632 | NA | non-coding | upstream | 480392 | 15282700 ~ 15283545 (+) |
| G52628 | NA | non-coding | upstream | 516746 | 15246898 ~ 15247191 (+) |
| G52781 | NA | non-coding | downstream | 72842 | 15836985 ~ 15837809 (+) |
| G52798 | NA | non-coding | downstream | 115914 | 15880057 ~ 15895419 (+) |
| G52817 | NA | non-coding | downstream | 188905 | 15953048 ~ 15955372 (+) |
| G52856 | NA | non-coding | downstream | 297697 | 16061840 ~ 16063714 (+) |
| G52861 | NA | non-coding | downstream | 321385 | 16085528 ~ 16085843 (+) |
| AMCG00008931 | pp12c,LOC106564933 | other | upstream | 743091 | 14982573 ~ 15020846 (+) |
| AMCG00008919 | zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 | other | upstream | 952180 | 14807297 ~ 14811757 (+) |
| AMCG00008920 | NA | other | upstream | 968753 | 14783043 ~ 14795184 (+) |
| AMCG00008917 | smarcc2 | other | upstream | 1009293 | 14738449 ~ 14754644 (+) |
| AMCG00008910 | NA | other | upstream | 1221689 | 14527818 ~ 14542248 (+) |
| AMCG00008960 | rps11,rs11 | other | downstream | 92081 | 15856224 ~ 15863670 (+) |
| AMCG00008965 | NA | other | downstream | 131287 | 15895430 ~ 15910151 (+) |
| G52942 | NA | other | downstream | 597959 | 16362102 ~ 16362511 (+) |
| AMCG00008983 | NA | other | downstream | 815720 | 16579863 ~ 16587381 (+) |
| G53028 | NA | other | downstream | 908360 | 16672503 ~ 16673542 (+) |
