G52798


Basic Information

Item Value
gene id G52798
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15880057 ~ 15895419 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66090
aattgattttgtttcttcagaTTCTGGTGTTTGAACAGTTTAAAGAGACAAGACCTACAGTTCACTCTGTCCGtctcctgtctctccctctcactctcagAGGATATGCACTAATGCACTCTCAGTCTCTTCCTCTCACTCCCCTTCCCTCTCACACCCTCTCCAACTGTGAGATAATTACTTCTAGATTCTCTCTTCTCTATCTagctctcactcactcactcaatcTCTCACTGCTtggatatatttattatcagagGATTCTCTCTTCTATatcactcactctctccctcctgtaGATCTGACCAATACTTAGGTCTGCAAGATATCAATGTACTCCTGTTGCCGGAATTGCAGCACCCACAGTGCACAGGGGGCAGAGATCCAGTCACTGGAGCACAGCTGCAAGGCCTCATGGGAAATATAGTCCAATAAGAACACTTGCAGTCCTCCAAACCATAGCACAGAATAAAGTGGCTGCAGTACAGAACAGTGTAGCCATTCTGAGTCCAAGGGGAACTACAATTCCCATACTGCACTGGGGAATATACCCAATCATTGGCAATGGAGGCCCGTTGCAAGTTCTCATGGGAATAGTAATCTAAGCAATTATAATCATTTTCTGCTGTTTACAGAAATATGGGAGAATGAGAGAAAACAGGTCAACCAAATGACAAAAAAcgattattactattattatgaatttGGACAGCACAATTGCTATattggctaaaaaaaaaaaaaactaaaatacagaataaaaaaaaaaattcttatactactacaacaataataatactaataataataggatcTTGGAGTGTTAAGACCTCTTGTGGCCATCTCCTGGTACGGCAGTCAACGAGACTCAGGCTGCTGCTGAGGAATCTAGAATgagtctgtactgtactatgattgtactgtgtacagtgtgactatactgtactgtgattTTACTGTGTATAGTGtgaatgtactgtactgtgattGTTCTGTGTTtagtgtctgtactgtactgtgattCTACTGTGTATAGTGTGACTACTATAGCATCCAGTCAGTCCgtcttactgtactgtagtgtccagtgaGTCGGTGTTAATaaactgtagtgtccagtcagccagtcagtcagtgttaatgtactgtagtgtgcagtcagtcagtcagtgtgtctgtactgtattacaccCCTCCCTCAGTAGTGCTGTGGTTTCTGGATGTCCCCAGTGTTCAGGCGGGGGCGGGGAAGGTCGCCGAACATCTCCGTGCCGTCGGTAACACTGAGGGTCAGTGCGCGCATGCTGGCCGCAATGTGGGCCAGGTCTGGACTGtcctgTCTCGGCGCTGTGGCTGTCTCCCTGAGGGGGGTGTCCCCCCCTGAAACCCCAGACGGGCACAGAGACGGGTAGGGAACGGGCAAGtgagggggggcgggggcagcGTGACGAGAACGAGGTTGTCCCCACGGCAATGCTGCGCTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66090 True 1484 lncRNA 0.46 2 15880057 15895419

Neighbor

gene id symbol gene type direction distance location
AMCG00008954 NA coding upstream 229784 15641691 ~ 15650273 (+)
AMCG00008952 syt1 coding upstream 239122 15633723 ~ 15640935 (+)
AMCG00008953 NA coding upstream 256654 15622818 ~ 15623403 (+)
AMCG00008955 NA coding upstream 271749 15599331 ~ 15608308 (+)
AMCG00008949 NA coding upstream 357761 15519629 ~ 15522296 (+)
AMCG00008967 NA coding downstream 35897 15931316 ~ 15931979 (+)
AMCG00008966 NA coding downstream 47738 15943157 ~ 15951025 (+)
AMCG00008970 NA coding downstream 96694 15992113 ~ 15992550 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding downstream 157130 16052549 ~ 16054525 (+)
AMCG00008972 NA coding downstream 230722 16126141 ~ 16134060 (+)
G52781 NA non-coding upstream 42248 15836985 ~ 15837809 (+)
G52766 NA non-coding upstream 115914 15763937 ~ 15764143 (+)
G52717 NA non-coding upstream 177042 15627840 ~ 15703015 (+)
G52691 NA non-coding upstream 366039 15513535 ~ 15514018 (+)
G52651 NA non-coding upstream 448456 15412001 ~ 15431601 (+)
G52817 NA non-coding downstream 57629 15953048 ~ 15955372 (+)
G52856 NA non-coding downstream 166421 16061840 ~ 16063714 (+)
G52861 NA non-coding downstream 190109 16085528 ~ 16085843 (+)
G52863 NA non-coding downstream 202821 16098240 ~ 16098446 (+)
G52877 NA non-coding downstream 313529 16208948 ~ 16210044 (+)
AMCG00008960 rps11,rs11 other upstream 16387 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 859211 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1068300 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1084873 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 1125413 14738449 ~ 14754644 (+)
AMCG00008965 NA other downstream 11 15895430 ~ 15910151 (+)
G52942 NA other downstream 466683 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 684444 16579863 ~ 16587381 (+)
G53028 NA other downstream 777084 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 784406 16679825 ~ 16726295 (+)

Expression


Co-expression Network