G52809


Basic Information

Item Value
gene id G52809
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15908664 ~ 15910151 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66109
GCAGATTCAATGGTCTTTTATTCGGCCAAGACAAACAACACAGTGACGCTACAGAAAAACGTCACAGCAAGCCCACCGTGCTGGTCTCACAGAGATTAACACAGGTTCTTAGACAACAGCGCAGGAAACGCCCCTGACATTCCTGTTGCAACCCTGCTCCAGCGGACACAATTACTGCCATTGGAAGACAGGAAAATTGATTATAGAGGATTATATGTGTGCTTATATATGGTAAGAgtatgtgtctttgtgtgtgttattgtaggTGGAGGTCTCCAAACTGGATAGACCATCATGTTGACTTTTGACCTCAAATCAACTCTACAAAtcatgatatatttaaaaagagagacagacagagagacttAGAGAAACAGAGAtagggagagacacagacagacacagagaaacacacagagagccacagatagacacacagagagacatagTGACAATGTTATCTGAAGCCACTGCCCTGAACAGAACTGATATAATCAAACCATGACTGTCTCGCAGTGTAGTGAGTGTagtgtaaataattatatagtTATGACACACCCTTtattaatcaatacattgaGAGACATTCACAGCTAGACCCCAGCAACACACATGCACTGCAGGTCACAAATCAAAGGGTTAAGGGTAGGTAGGGGGCGGGTGCTGGACCTCGGTCACGGCCCCTAATTGgctggaggtggtggtggtggattCTGATTGGATGAGAGGGCTGCTGGAACTACGCTCTGAGATGCCTGACTGGACAGGGAGGGGACAGAGACCCAAAACCTCCCGGACTTTGGCAGACACCAGGAGAGGAGCTCAGCTGGGTGTAGATGCCCTCAGCACAGCAGAGTACATAGGACACATCCAACTGCATTGACAGATCATTGATgtgctgagagagggagggagggagagacagacagagggagagatggaaagagagaatCACTGATATTTTAATCTAGAAACAGCGCCCCTACAATTTCAGGCAGAGAGGCAAAATGCAGCACTGTACAgtcataataacaatactactactagcgataacaataataaaattattaaaaacaaaaagaacaacaaaaacaaaaatagtaataTTGGGTAAACTGCAACAAACTGAGCGACTGAAGTTAGTCCCCAGTTGTGGAATAAAAAAGGTCTCCATTGCAACAAACCCCAAAAtaactgctgctgccctctagaggagactaagtaAGGGACTAACTTAGTCCTACTTCAGCTTTGGAATAACTATGGAAAGTACCATACTAAGCGGAACAAAATGTGataaatcacaaaatgtatgaatgtattgacacattttgtaactgaactaTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66109 True 1348 lncRNA 0.43 2 15908664 15910151

Neighbor

gene id symbol gene type direction distance location
AMCG00008968 NA coding downstream 10498 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 51465 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 78035 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 107291 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 223614 15667816 ~ 15685050 (-)
AMCG00008973 NA coding upstream 306387 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 363653 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 383165 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 409217 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 426264 16336415 ~ 16338708 (-)
G52808 NA non-coding downstream 257 15905873 ~ 15908407 (-)
G52794 NA non-coding downstream 42678 15865748 ~ 15865986 (-)
G52793 NA non-coding downstream 44959 15859523 ~ 15863705 (-)
G52774 NA non-coding downstream 86446 15821186 ~ 15822218 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding downstream 395441 15507248 ~ 15513223 (-)
G52812 NA non-coding upstream 20424 15930575 ~ 15931134 (-)
G52814 NA non-coding upstream 29945 15940096 ~ 15940302 (-)
G52831 NA non-coding upstream 34647 15944798 ~ 15950331 (-)
G52866 NA non-coding upstream 214812 16124963 ~ 16126267 (-)
G52873 NA non-coding upstream 219130 16129281 ~ 16130351 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 56854 15834040 ~ 15851810 (-)
G52782 NA other downstream 70863 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 269534 15603825 ~ 15639130 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 403147 15469674 ~ 15505517 (-)
AMCG00008934 NA other downstream 851458 15032347 ~ 15057206 (-)
G52834 NA other upstream 47516 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 153403 16063554 ~ 16073935 (-)
G52951 NA other upstream 494559 16404710 ~ 16405126 (-)
G53017 NA other upstream 703073 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 913644 16823795 ~ 16913299 (-)

Expression


Co-expression Network