G52831


Basic Information

Item Value
gene id G52831
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15944798 ~ 15950331 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66144
TTTCTTCCATTCCTATAGCACACTCCTTcttccttttcctcttcctttCCCTCCCCCTGCCTTCCTCCATACCCTTCTTCTCTACCTGCTGGTACTCCTTCTTCTGCTCCTgaagtgctctctctctctctctcagttcctCCTGTTCCTGTTTCAACTGCTGCGCCTTCTTTACTAGCTCCGCCTCCTGTGCCGCTAGCTCCACCTCAAACTGCTGGAGCTCTGCCTCTGAGTAAAGGGGCCGCTCGTCCAGAGTcTCCCACTCTCCAGGGCTGTTGAATTCCTTCTTCTCTGTCGACTTCAGGAACTCTTCCAAGCTGACGAGCCGATcgtgattggagtccacATTCTTCATGACATGCTCCCTCATCCTCAgcctctcctcctccatctccatCATGTCATCCTCCTCATTACGTGGGTCATACACCTTCTCCagctaagagagagagagagagagagagaaaagagaagcaGTCACTGATGGAGTGACAGAGACAGTGATGGGGGGATAGAGAAAGGTAAAGGAGGGATGCAGACCGTGGAGAGTGAAGAAGGTTTTGGGGTTGAATTCCTGGGGGTCGAGTCCATCCGTCTCCTCCCACACCTCCCTGAGCTGAGCCTTactgccAGGGGCGTTGAGCTTCGGGTGCATCTTGTGTTTCTCCTGCAGATCCTGCAGGCGGCGCTCCTCCGTCTCCCGGCGCTCCTGGTCCAGTCCCTTTAGGTACTCCCTGCGCTCATGCTCCTTCAGCATCTCGTAGCGCTTGAACTCCTCGTGCCGGGCGGCATCGTAGCTCTCCAGGTCTTTGGCCTCAAAGGTGTGCAGGTTCTGAGGGTCCAGGTGCTCAAATTGCTTCAGCAGGGAGGCATGGTCTATCTgcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66144 True 888 lncRNA 0.55 6 15944798 15950331

Neighbor

gene id symbol gene type direction distance location
AMCG00008968 NA coding downstream 46632 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 87599 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 114169 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 143425 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 259748 15667816 ~ 15685050 (-)
AMCG00008973 NA coding upstream 266207 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 323473 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 342985 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 369037 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 386084 16336415 ~ 16338708 (-)
G52814 NA non-coding downstream 4496 15940096 ~ 15940302 (-)
G52812 NA non-coding downstream 13664 15930575 ~ 15931134 (-)
G52809 NA non-coding downstream 34647 15908664 ~ 15910151 (-)
G52808 NA non-coding downstream 36391 15905873 ~ 15908407 (-)
G52794 NA non-coding downstream 78812 15865748 ~ 15865986 (-)
G52866 NA non-coding upstream 174632 16124963 ~ 16126267 (-)
G52873 NA non-coding upstream 178950 16129281 ~ 16130351 (-)
G52915 NA non-coding upstream 258534 16208865 ~ 16215015 (-)
G52918 NA non-coding upstream 288427 16238758 ~ 16254139 (-)
G52929 NA non-coding upstream 361061 16311392 ~ 16313985 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 92988 15834040 ~ 15851810 (-)
G52782 NA other downstream 106997 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 305668 15603825 ~ 15639130 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 439281 15469674 ~ 15505517 (-)
AMCG00008934 NA other downstream 887592 15032347 ~ 15057206 (-)
G52834 NA other upstream 7336 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 113223 16063554 ~ 16073935 (-)
G52951 NA other upstream 454379 16404710 ~ 16405126 (-)
G53017 NA other upstream 662893 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 873464 16823795 ~ 16913299 (-)

Expression


Co-expression Network