G52861


Basic Information

Item Value
gene id G52861
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16085528 ~ 16085843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66180
ccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccacttgagccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgatggtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66180 True 316 lncRNA 0.51 1 16085528 16085843

Neighbor

gene id symbol gene type direction distance location
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 31003 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 92978 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 134503 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 153549 15931316 ~ 15931979 (+)
AMCG00008954 NA coding upstream 435255 15641691 ~ 15650273 (+)
AMCG00008972 NA coding downstream 40298 16126141 ~ 16134060 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 344974 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 461774 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 475179 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 513817 16599660 ~ 16602244 (+)
G52856 NA non-coding upstream 21814 16061840 ~ 16063714 (+)
G52817 NA non-coding upstream 130156 15953048 ~ 15955372 (+)
G52798 NA non-coding upstream 190109 15880057 ~ 15895419 (+)
G52781 NA non-coding upstream 247719 15836985 ~ 15837809 (+)
G52766 NA non-coding upstream 321385 15763937 ~ 15764143 (+)
G52863 NA non-coding downstream 12397 16098240 ~ 16098446 (+)
G52877 NA non-coding downstream 123105 16208948 ~ 16210044 (+)
G52890 NA non-coding downstream 157694 16243537 ~ 16244943 (+)
G52896 NA non-coding downstream 225549 16311392 ~ 16319852 (+)
G52931 NA non-coding downstream 257173 16343016 ~ 16344076 (+)
AMCG00008965 NA other upstream 175377 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 221858 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1064682 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1273771 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1290344 14783043 ~ 14795184 (+)
G52942 NA other downstream 276259 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 494020 16579863 ~ 16587381 (+)
G53028 NA other downstream 586660 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 593982 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 645546 16731389 ~ 16737499 (+)

Expression


Co-expression Network