G52866


Basic Information

Item Value
gene id G52866
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16124963 ~ 16126267 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66188
TTTCCATCTCCACCTCATTCCCCCCCTTCTCTGCCGCATTCTTCTCATTCTTGCTGTGCTTGGGGTtctcacactccctctctcctcctcctcctcctcctccgccatCCTCAGGTGGCTTTTCCATCACTCTacctccccaccccacctctctttctctctctctctcgttttttCTGTAGTGAAAGTGGGATGGTGGGcgtctcactttctctctctcaccttttctgtttgtcactctctctctctctctctctgtctatattCAGTAGGAGATCATATAGAGACCAGACTGAGCCCCATACTTTATTACTCTAAACTATATTACTATACTACTATGTTCTATACTTCatattactgtattactgtacactgcacaacactgtaTACTTTACACCACACACCACtctaaatactgtacattatacactgcacactgtaatAATGACTACACACTACTATAGACTATATACACTGTCCACTATATTCTGTAACTCTGTAATAATATTGCACTgtacactacactgtattacTGCTATTACACACTACACCGTATCAGTGtaacactactactacacactgtacactgtagacTGTATCAATATGTTACTACTACAATACCCTGTGCACTGCATTAATGTATAGGTGTAGTACTGCTACCACACACCGTACACCAGACATCTGTGTCAGTGTAAGTGCTGCTGTTACACTgcagtactgtacagtgtgCTACTGCTGGTATTGTATGAATTTACACTATCTGTAGtgcactgcaaaaaatatacactcataTGTCTCGCTGCTGAAGTAATAGCAGTAGTTTAGATACACTGCACACGGTATCACACTGTATCGTACTGGGCACTGCAACACTGATACAGCTGTATTGTGTAGCACTGCACTGTAACTGCTGCACAGTGTCACTAACGCAGTAACACTGTAGACTATAAAACAGATTTAGTTCTGCATATTAACAGGGTAAGACTGTAcaatccctctctctttccctcccctgcccccttttgtctccctccttccccactctccttctcttctctctggGTTTAGTGCCTTGAGTAAGTCTTCccctctctcaattcaattcaattcaaggtgctttattggcatgccATATGTAATatatctctctccctttctctctctcctcccctgtTCCTGTCTTTCTGTCCCACCTGTCCTCCCcactcttttctctctctctacctttttaaaaattgtgtCCAGTCAGTGCAGTCCAGCTCTCTGTAGTTCAATGTCTTgagtcagtctctctctctctctctc

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66188 True 1305 lncRNA 0.43 1 16124963 16126267

Neighbor

gene id symbol gene type direction distance location
AMCG00008968 NA coding downstream 226797 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 267764 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 294334 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 323590 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 439913 15667816 ~ 15685050 (-)
AMCG00008973 NA coding upstream 90271 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 147537 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 167049 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 193101 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 210148 16336415 ~ 16338708 (-)
G52831 NA non-coding downstream 174632 15944798 ~ 15950331 (-)
G52814 NA non-coding downstream 184661 15940096 ~ 15940302 (-)
G52812 NA non-coding downstream 193829 15930575 ~ 15931134 (-)
G52809 NA non-coding downstream 214812 15908664 ~ 15910151 (-)
G52808 NA non-coding downstream 216556 15905873 ~ 15908407 (-)
G52873 NA non-coding upstream 3014 16129281 ~ 16130351 (-)
G52915 NA non-coding upstream 82598 16208865 ~ 16215015 (-)
G52918 NA non-coding upstream 112491 16238758 ~ 16254139 (-)
G52929 NA non-coding upstream 185125 16311392 ~ 16313985 (-)
G52938 NA non-coding upstream 225745 16352012 ~ 16352300 (-)
AMCG00008971 NA other downstream 51028 16063554 ~ 16073935 (-)
G52834 NA other downstream 161346 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 273153 15834040 ~ 15851810 (-)
G52782 NA other downstream 287162 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 485833 15603825 ~ 15639130 (-)
G52951 NA other upstream 278443 16404710 ~ 16405126 (-)
G53017 NA other upstream 486957 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 697528 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 1598452 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1742119 17868386 ~ 17868696 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G188769 NA non-coding NC_035918.1 CM008321.1 10833476 ~ 10887584 (+)