G52873


Basic Information

Item Value
gene id G52873
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16129281 ~ 16130351 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66195
TAGGTTCAACATCAGCTGTTTAATAGCAATGaatccacaaacacacacttcagcCCAGGAACACAGATGGGAAGATGAATaagcagagacagacagatgtgaATAAACAAAGTGTCCTCAAGCAGGCTAAACACAAGACCTACAGTGGGCGTGACTGGTCTCATGCTGGGCCACCAATATTCACCAGAGCCTGGTGCTGATCCTGAGCACTGGGCCTGTCTGCCACTGCTTTGGCAACCCTGAAGTAGCTCAGTCATTCCAATAAAGCTGGTTTTGAATTGGCATCTGAAGCAGAATTTCCTTGGCAGCCTCTCTTCtcccataaaaaaaaagtcactgtgagtgtgtgatcTCCTGCAGCTTAGATTGGCCAGTGCGCTTTGTACCAGTCAGTCAGGCAGAcactcagtgtatcagtcagtccgTCAGTTAGTTAGTTTATTGGGCAGCTGCCTCCTGAAACACTGTCACAATTCCTCCATACTACCTAAAATACCTTACCACAAATATAATATAGAAATAGATatttggataaataaataaataaattagcacATTAACAAATTCCACAAAAATAAGTACACCATTACATACATATGCAAACACTGGAAGTCTGATCCTCATGAAACGGTCTGAGTTAAAAGGATCATCAATGACAAACAGTCAATCAGATCATAAATTAATCACAGACAAACcatacattaacacattaataaatatgtataaatattttgtcaGGGAATATGCTGTGAGGTTCATTCTCTTCCCTTGTCACGCTGTTCTCTCCCTCCCTACCTCTTTCTGACCAGTCAGTCATCGTGACTGTcatgtagtgtccagtcagccagtcaatatgaatgtaatgtagtgtccagtcagtcactcagtcagtgttaatCTGCTGTAGTAtccattcagtcagtcagtgtatctcTCTTgccctccatccctctccaGCTCTCACACCTGAGTGACCAAGGATTGTCTCAGATATAGCCCCCCCCTCATGCCCTCTTCCCCAGCACACAGCCCCCCCAGGAAATCCGCATTTAGCGGCCCGCAAATCCCCAG

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU66195 True 1071 lncRNA 0.44 1 16129281 16130351

Neighbor

gene id symbol gene type direction distance location
AMCG00008968 NA coding downstream 231115 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 272082 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 298652 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 327908 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 444231 15667816 ~ 15685050 (-)
AMCG00008973 NA coding upstream 86187 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 143453 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 162965 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 189017 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 206064 16336415 ~ 16338708 (-)
G52866 NA non-coding downstream 3014 16124963 ~ 16126267 (-)
G52831 NA non-coding downstream 178950 15944798 ~ 15950331 (-)
G52814 NA non-coding downstream 188979 15940096 ~ 15940302 (-)
G52812 NA non-coding downstream 198147 15930575 ~ 15931134 (-)
G52809 NA non-coding downstream 219130 15908664 ~ 15910151 (-)
G52915 NA non-coding upstream 78514 16208865 ~ 16215015 (-)
G52918 NA non-coding upstream 108407 16238758 ~ 16254139 (-)
G52929 NA non-coding upstream 181041 16311392 ~ 16313985 (-)
G52938 NA non-coding upstream 221661 16352012 ~ 16352300 (-)
G52944 NA non-coding upstream 232271 16362622 ~ 16362879 (-)
AMCG00008971 NA other downstream 55346 16063554 ~ 16073935 (-)
G52834 NA other downstream 165664 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 277471 15834040 ~ 15851810 (-)
G52782 NA other downstream 291480 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 490151 15603825 ~ 15639130 (-)
G52951 NA other upstream 274359 16404710 ~ 16405126 (-)
G53017 NA other upstream 482873 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 693444 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 1594368 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1738035 17868386 ~ 17868696 (-)

Expression


Co-expression Network