G52877


Basic Information

Item Value
gene id G52877
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16208948 ~ 16210044 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66199
CTGCCACAGGCTAGGCTTCCCTTCCTGGAGATTAAGGCAGAAGAACAAATGTTTACACCAGTAACTTGAATATAGTTACTCACCCATCCcagttgtttgggtttttattCAGGGTTGGTCCCCATATCTCTCTGCCATACAGTAGAATGGGCTGAATTAtgctattaaatatttttaaccagattttgattggtttgattttgatttgattttgaagaaATGCCCTGCATGCTTTTCCTTTCAGCTGTTATAGCGAGGCTACATGTGTCTGAAGAACTGACCCGTCAGTTGGTGTCTTTATTAacccgctccctctctctcaggtgctGGAGACCTCTGACATCCCAGCGGGTGTGGTCAACATtgtgagtggggagagggaTCACCTGACCCGGCACCTGGCGAATCACAGTGTAGTACAGACTCTGTGGTACTGGGGGTCACGAgaggGCTGTCAGTTTGTGCGGTACACTTGTGCTCGGGCTGGAAGGAGGATGTGGGTGAATGAGAGCGAGGGAGGAGCAGAGAGGGAGTGGGGCTACAGTCGGATAGAAGAGTCTCTCCAGCACAGCACTCAGTACAAACAAGTCTGGATCCCAAGTACAGTGTAGACAGAGACCgagagactgactgactgatccAGTGGCTGACGGTTACCCTACAATATCTTCACTGcgctgagagagacagacggagaCACTCAGTTAGATATTATGGTTTATCAACCCACTGATGGCAGTGCATTAAGGTCTGATTAACCAGATGATCCAATTAGCCTGACCAATTAGCTTGATTTGTCACTGGAATTGTGAGCCCAGGTAATTAAGGACATGTTAATTTCAAATCTCCTCTCAACAGTACATCTCTGTATGGTTTCGTATCTGATGGTTTAATAAAGTATTCTAACATTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66199 True 911 lncRNA 0.46 2 16208948 16210044

Neighbor

gene id symbol gene type direction distance location
AMCG00008972 NA coding upstream 74888 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 154423 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 216398 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 257923 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 276969 15931316 ~ 15931979 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 220773 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 337573 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 350978 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 389616 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 449948 16659992 ~ 16671430 (+)
G52863 NA non-coding upstream 110502 16098240 ~ 16098446 (+)
G52861 NA non-coding upstream 123105 16085528 ~ 16085843 (+)
G52856 NA non-coding upstream 145234 16061840 ~ 16063714 (+)
G52817 NA non-coding upstream 253576 15953048 ~ 15955372 (+)
G52798 NA non-coding upstream 313529 15880057 ~ 15895419 (+)
G52890 NA non-coding downstream 33493 16243537 ~ 16244943 (+)
G52896 NA non-coding downstream 101348 16311392 ~ 16319852 (+)
G52931 NA non-coding downstream 132972 16343016 ~ 16344076 (+)
G52933 NA non-coding downstream 134212 16344256 ~ 16344678 (+)
G52945 NA non-coding downstream 159128 16369172 ~ 16369414 (+)
AMCG00008965 NA other upstream 298797 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 345278 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1188102 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1397191 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1413764 14783043 ~ 14795184 (+)
G52942 NA other downstream 152058 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 369819 16579863 ~ 16587381 (+)
G53028 NA other downstream 462459 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 469781 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 521345 16731389 ~ 16737499 (+)

Expression


Co-expression Network