G52896


Basic Information

Item Value
gene id G52896
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16311392 ~ 16319852 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66218
acagtattagtatggtgttcctaataatcctttaggtgagtgtatgtgatgATAATAGGAGTGTTAGtgtaacagacagacagacacacaaagctTAGTTTCTCTCTTCATGGCTAGTTACgctaaaaaaacaatcaaactctTTACCATAGAGAAATATGGTCAATGAATCAgactcattaaaatacattaatacccAATAGCAGAAcagtatatatgtacacacacatacaaagcaTTAGAATTATTATGGTCAAATGGTACATGTGATTCTACACTAGCACGCAGATATGCGACCCAATCACCACACAGGGGCTGGAGCATGTGTGTGGGGAAACGTGGGTGGAGCATACATCCAGACACACAAAGGCACTGAAATGCCCTCTGCCTTCCCCATGAGTGATTGTCTGGCCTTGATGATGGCGAAGGGAGAACCAATCAGCACACCACAGGGGCCCAGTCACTCTCATTGCGTCCATACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66218 True 483 lncRNA 0.42 2 16311392 16319852

Neighbor

gene id symbol gene type direction distance location
AMCG00008972 NA coding upstream 177332 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 256867 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 318842 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 360367 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 379413 15931316 ~ 15931979 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 110965 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 227765 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 241170 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 279808 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 340140 16659992 ~ 16671430 (+)
G52890 NA non-coding upstream 66449 16243537 ~ 16244943 (+)
G52877 NA non-coding upstream 101348 16208948 ~ 16210044 (+)
G52863 NA non-coding upstream 212946 16098240 ~ 16098446 (+)
G52861 NA non-coding upstream 225549 16085528 ~ 16085843 (+)
G52856 NA non-coding upstream 247678 16061840 ~ 16063714 (+)
G52931 NA non-coding downstream 23164 16343016 ~ 16344076 (+)
G52933 NA non-coding downstream 24404 16344256 ~ 16344678 (+)
G52945 NA non-coding downstream 49320 16369172 ~ 16369414 (+)
G52946 NA non-coding downstream 76428 16396280 ~ 16396481 (+)
G53025 LOC100846954,LOC107575789 non-coding downstream 334341 16654193 ~ 16654923 (+)
AMCG00008965 NA other upstream 401241 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 447722 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1290546 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1499635 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1516208 14783043 ~ 14795184 (+)
G52942 NA other downstream 42250 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 260011 16579863 ~ 16587381 (+)
G53028 NA other downstream 352651 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 359973 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 411537 16731389 ~ 16737499 (+)

Expression


Co-expression Network