G52915


Basic Information

Item Value
gene id G52915
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16208865 ~ 16215015 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66240
NTGTGCGTCACGGTCCGATACAGGAGAGAAGCTACTAacgttacattagGATACTCCCCAACCTGGCTCCACTGTCTGTCTGAGGCAGCCAATCGGAGTGGTGGGAGTGGTCTGCCCTGATGACAGacccctcctctcctttgtcTGGTTAATGGGGGCAGCGGTCTCCCGCGGCAACACTGTCGTCATGGTGCCCAGCGAGAAGCACCCCTTCTCTGCCCTGCAGCTGATTCAGGTGAtccctctccccactcacaATGTTGACCACACCCGCTGGGATGTCAGAGGTCTCCagcacctgagagagagggagcgggtTAATAAAGACACCAACTGACGGGTCAGTTCTTCAGACACATGTAGCCTCGCTATAACAGCTGAAAGGAAAAGCATGCAGGGCATttcttcaaaatcaaatcaaaatcaaaccaatcaaaatctggttaaaaatatttaatagcaTAATTCAGCCCATTCTACTGTATGGCAGAGAGATATGGGGACCAACCCTGaataaaaacccaaacaactgGGATGGGTGAGTAACTATATTCAAGTTACTGGTGTAAACATTTGTTCTTCTGCCTTAATCTCCAGGAAGGGAAGCCTAGCCTGTGGCAGGCATATACGGGACAGGCTGGTGCTGATCTGCCATAGACCAGAGCAgcgtacagtgcatccggaaagtattcacagcgcttcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66240 True 704 lncRNA 0.50 3 16208865 16215015

Neighbor

gene id symbol gene type direction distance location
AMCG00008968 NA coding downstream 310699 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 351666 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 378236 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 407492 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 523815 15667816 ~ 15685050 (-)
AMCG00008973 NA coding upstream 1523 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 58789 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 78301 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 104353 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 121400 16336415 ~ 16338708 (-)
G52873 NA non-coding downstream 78514 16129281 ~ 16130351 (-)
G52866 NA non-coding downstream 82598 16124963 ~ 16126267 (-)
G52831 NA non-coding downstream 258534 15944798 ~ 15950331 (-)
G52814 NA non-coding downstream 268563 15940096 ~ 15940302 (-)
G52812 NA non-coding downstream 277731 15930575 ~ 15931134 (-)
G52918 NA non-coding upstream 23743 16238758 ~ 16254139 (-)
G52929 NA non-coding upstream 96377 16311392 ~ 16313985 (-)
G52938 NA non-coding upstream 136997 16352012 ~ 16352300 (-)
G52944 NA non-coding upstream 147607 16362622 ~ 16362879 (-)
G52999 NA non-coding upstream 326253 16541268 ~ 16541555 (-)
AMCG00008971 NA other downstream 134930 16063554 ~ 16073935 (-)
G52834 NA other downstream 245248 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 357055 15834040 ~ 15851810 (-)
G52782 NA other downstream 371064 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 569735 15603825 ~ 15639130 (-)
G52951 NA other upstream 189695 16404710 ~ 16405126 (-)
G53017 NA other upstream 398209 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 608780 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 1509704 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1653371 17868386 ~ 17868696 (-)

Expression


Co-expression Network