G52918


Basic Information

Item Value
gene id G52918
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16238758 ~ 16254139 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66243
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagtgtgtctgtttgtgtgtctgggaatgtgtctgtgtgtctgtatgtggaTGGAAACCCACCAATCACACAGTTAttccacacactcacagacagacagacagacacacagacagaaatgcagaaaCTAGACagatgttctctctctctgtgcctctctgtctgtctctctctgtctctggttATATGAGCGTGTCTGTATGTGAGTATGTGTGAGCGTGTTTGTGTttgggacagacagacacacagaaatacagacagaaaTATAGGAAATAGATACTCACACATTCTTAGACAGACAAAGTCTCCTTGCATTGCAGAaatagagaaaaagagagagagagatggagggacaGTGTTGCCTGTTTAATGTGACTGATTGAATGATATTTTTTgctggaaaatgaaaagactCAATTATATGGATATTTCAAAGGAatgtttctgtgtctttttatatttttaaaaactgtaaaaacagatcaaacaggggttaaaagtataataatttTAGATAATGCTTATACTGAACATAACTGTGCTTTCAATGAAAATTgcagaacaaatattttaacacagacttgactaataacaataataataatgataatgataataataataataataattgatatacataaaaaatcacaacaattatgttttttggggggtgggggggtggggaggttaATAATGAATGCTCTAATTTACCCCAAATGGCAGGACTCCTTTTAATAATGATATTTCAGACTAGTGTGGGGGggacaaaaatgcaaaaaaatgaaaaatacaacaaaaacaaaaacaaaacaaaaaataatcaaaaaaattaagaggaaaaaaataaataaataaaaaatccttgAAGCTTCTGCCAAAAGATctcttgtttctgttgttgtccTGTGTCTTTCCTGAGAGGGGGTTTGGGGTAGAGTCTCTTGATACACTGTCAGTCCACAAACTGGTGCAGAt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66243 True 1077 lncRNA 0.36 3 16238758 16254139

Neighbor

gene id symbol gene type direction distance location
AMCG00008973 NA coding downstream 5626 16216538 ~ 16233132 (-)
AMCG00008968 NA coding downstream 340592 15895688 ~ 15898166 (-)
AMCG00008961 NA coding downstream 381559 15853214 ~ 15857199 (-)
AMCG00008962 NA coding downstream 408129 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 437385 15788545 ~ 15801373 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 19665 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 39177 16293316 ~ 16298256 (-)
AMCG00008976 LOC107551165 coding upstream 65229 16319368 ~ 16322631 (-)
AMCG00008975 NA coding upstream 82276 16336415 ~ 16338708 (-)
AMCG00008980 NA coding upstream 224649 16478788 ~ 16519566 (-)
G52915 NA non-coding downstream 23743 16208865 ~ 16215015 (-)
G52873 NA non-coding downstream 108407 16129281 ~ 16130351 (-)
G52866 NA non-coding downstream 112491 16124963 ~ 16126267 (-)
G52831 NA non-coding downstream 288427 15944798 ~ 15950331 (-)
G52814 NA non-coding downstream 298456 15940096 ~ 15940302 (-)
G52929 NA non-coding upstream 57253 16311392 ~ 16313985 (-)
G52938 NA non-coding upstream 97873 16352012 ~ 16352300 (-)
G52944 NA non-coding upstream 108483 16362622 ~ 16362879 (-)
G52999 NA non-coding upstream 287129 16541268 ~ 16541555 (-)
G53042 NA non-coding upstream 419570 16673709 ~ 16729192 (-)
AMCG00008971 NA other downstream 164823 16063554 ~ 16073935 (-)
G52834 NA other downstream 275141 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 386948 15834040 ~ 15851810 (-)
G52782 NA other downstream 400957 15836989 ~ 15837801 (-)
AMCG00008957 NA other downstream 599628 15603825 ~ 15639130 (-)
G52951 NA other upstream 150571 16404710 ~ 16405126 (-)
G53017 NA other upstream 359085 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 569656 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 1470580 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1614247 17868386 ~ 17868696 (-)

Expression


Co-expression Network