G52942


Basic Information

Item Value
gene id G52942
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16362102 ~ 16362511 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66272
AGGAATACCTCCCCTGAGTCCTGGTGAAGCTGCCCAGAtgtctgatgaagatgaaggagtTAGCACTGTTGATGAAGATGCAGGTGCATCTAACACAAAATCAAGATGGTCGGAAGACAGGGACCCAAAagagAGTGGTGTCAGCGCTCCTCCTCTGAGCCCCAGGGATGCTCTCCCAATGTCTGATGAAGACGAAGGTGTCAACACTGGTGATGAGTCTGAAGATGATGACAAGGACCATGAATATGGC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66272 True 250 TUCP 0.50 2 16362102 16362511

Neighbor

gene id symbol gene type direction distance location
AMCG00008972 NA coding upstream 228042 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 307577 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 369552 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 411077 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 430123 15931316 ~ 15931979 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 68306 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 185106 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 198511 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 237149 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 297481 16659992 ~ 16671430 (+)
G52933 NA non-coding upstream 17424 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 18026 16343016 ~ 16344076 (+)
G52896 NA non-coding upstream 42250 16311392 ~ 16319852 (+)
G52890 NA non-coding upstream 117159 16243537 ~ 16244943 (+)
G52877 NA non-coding upstream 152058 16208948 ~ 16210044 (+)
G52945 NA non-coding downstream 6661 16369172 ~ 16369414 (+)
G52946 NA non-coding downstream 33769 16396280 ~ 16396481 (+)
G53025 LOC100846954,LOC107575789 non-coding downstream 291682 16654193 ~ 16654923 (+)
G53069 NA non-coding downstream 473101 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 596002 16958513 ~ 16959031 (+)
AMCG00008965 NA other upstream 451951 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 498432 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1341256 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1550345 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 1566918 14783043 ~ 14795184 (+)
AMCG00008983 NA other downstream 217352 16579863 ~ 16587381 (+)
G53028 NA other downstream 309992 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 317314 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 368878 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 384176 16746687 ~ 16750798 (+)

Expression


Co-expression Network