G52945


Basic Information

Item Value
gene id G52945
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16369172 ~ 16369414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66275
AGGAACAACTACGGAAAGAGGAACACTCATTAACCATGTGTATGTTAAAGATATTGATAATGTTGCTATTCAGGTGCTACcgacatatttcagttttaatgagGCTATTTCTGTCACATTGACTTAAGCAATTTGTGTGATAGAAACATCCGTCCGCAATATCAGGGGGGGTAGGGGTGTAAGCATAAAAGAGGACGGCACCccaaataaagttttattataGTGGGGGTTCAGAACCAGAGC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66275 True 243 lncRNA 0.40 1 16369172 16369414

Neighbor

gene id symbol gene type direction distance location
AMCG00008972 NA coding upstream 235112 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 314647 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 376622 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 418147 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 437193 15931316 ~ 15931979 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 61403 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 178203 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 191608 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 230246 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 290578 16659992 ~ 16671430 (+)
G52933 NA non-coding upstream 24494 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 25096 16343016 ~ 16344076 (+)
G52896 NA non-coding upstream 49320 16311392 ~ 16319852 (+)
G52890 NA non-coding upstream 124229 16243537 ~ 16244943 (+)
G52877 NA non-coding upstream 159128 16208948 ~ 16210044 (+)
G52946 NA non-coding downstream 26866 16396280 ~ 16396481 (+)
G53025 LOC100846954,LOC107575789 non-coding downstream 284779 16654193 ~ 16654923 (+)
G53069 NA non-coding downstream 466198 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 589099 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 640108 17009522 ~ 17009721 (+)
G52942 NA other upstream 6661 16362102 ~ 16362511 (+)
AMCG00008965 NA other upstream 459021 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 505502 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1348326 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1557415 14807297 ~ 14811757 (+)
AMCG00008983 NA other downstream 210449 16579863 ~ 16587381 (+)
G53028 NA other downstream 303089 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 310411 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 361975 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 377273 16746687 ~ 16750798 (+)

Expression


Co-expression Network