G52946


Basic Information

Item Value
gene id G52946
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16396280 ~ 16396481 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66276
AGATAGCTAGATGGGAGGAGCACCTATTGCCAGTGAGAACCATTGCGGAAGGGTTAGCGTATAAAACTAACCATATTAATAAAGTCTGAACCCAGCCCCATATGTTCCAAGACCGTCCAGAGGTATCCCCATTCCAGACgatcaaaagctttttctgcATCCAGGGAGAGGACAGCACATGGGGAGTCAATATCTTTGACTG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66276 True 202 lncRNA 0.47 1 16396280 16396481

Neighbor

gene id symbol gene type direction distance location
AMCG00008972 NA coding upstream 262220 16126141 ~ 16134060 (+)
AMCG00008969 ppfia3,LOC101073574,LOC105926717,LOC101158391,LOC104920703,LOC103358375 coding upstream 341755 16052549 ~ 16054525 (+)
AMCG00008970 NA coding upstream 403730 15992113 ~ 15992550 (+)
AMCG00008966 NA coding upstream 445255 15943157 ~ 15951025 (+)
AMCG00008967 NA coding upstream 464301 15931316 ~ 15931979 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding downstream 34336 16430817 ~ 16451251 (+)
AMCG00008981 NA coding downstream 151136 16547617 ~ 16558958 (+)
AMCG00008979 NA coding downstream 164541 16561022 ~ 16564235 (+)
AMCG00008982 NA coding downstream 203179 16599660 ~ 16602244 (+)
AMCG00008984 NA coding downstream 263511 16659992 ~ 16671430 (+)
G52945 NA non-coding upstream 26866 16369172 ~ 16369414 (+)
G52933 NA non-coding upstream 51602 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 52204 16343016 ~ 16344076 (+)
G52896 NA non-coding upstream 76428 16311392 ~ 16319852 (+)
G52890 NA non-coding upstream 151337 16243537 ~ 16244943 (+)
G53025 LOC100846954,LOC107575789 non-coding downstream 257712 16654193 ~ 16654923 (+)
G53069 NA non-coding downstream 439131 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 562032 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 613041 17009522 ~ 17009721 (+)
G53131 NA non-coding downstream 623204 17019685 ~ 17019964 (+)
G52942 NA other upstream 33769 16362102 ~ 16362511 (+)
AMCG00008965 NA other upstream 486129 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 532610 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1375434 14982573 ~ 15020846 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 1584523 14807297 ~ 14811757 (+)
AMCG00008983 NA other downstream 183382 16579863 ~ 16587381 (+)
G53028 NA other downstream 276022 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 283344 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 334908 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 350206 16746687 ~ 16750798 (+)

Expression


Co-expression Network