G53017


Basic Information

Item Value
gene id G53017
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16613224 ~ 16614461 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66358
gagaagggagggaggaagagaggagggagagagagaggcaggggaaGGGTCACATTCTGTTCAATATTTCACTTATCTCTGACTACTTAGCAACAATACAATACCATTAACCAGATTTAAACtattattgtaattacagtGCATTGCAATTAACCAATTCCGCAACTATACTCAAGCAAGCTGAGATATTATGCTTCATGTACATACTAGACCCAACCCCTCCCtccacacacatatacacacacactcactcacacacatacattacagatacaaatatgATTTGCACCTTACTGCACTCAAATTAAAGTGTTTGAAGCACCTTGgtaataatttattatgaactttaattgaaactataatttaatattattttttatgtagttAGTGTGTAAGTGCTTGTGAGTTTCTAATCATTATATTTCTAAGTACTGTATgattacactttgtattgctcttatattttgtacgtcgccctggataagggcatctgctaaataataataataataataataataataatattagggagagggagaggaagacaaACAAGAGGAAAAGAGGAAGGGTAGAGGCAAGAACAAATGAGAAAGGCAGTGATTGAGGGTTTCTGTACAGTATCTTTGTGCTAGTATGTATTTGAACATTGTTGATATTTGACTCAGTCTGTTCATTCAGCACTGGagtttgtttttacactttttatacAGGGAGAGAGGATGGGGCAAAAGAGAGTAAGGGTAAGCTCCGTTAGATCGTCTCTGGTCCAGCTCAGGGAGGGTTGGGCCAGTTGGATATACTTGGGGCTGTATCCAGCAGCCATAACTGGGCCGGAATTACAGCCATTATTGGACCAGTTCTGGGCCAGAATCGGAGGGCTagatggggagagggagagagagggaaggaaggagagaggggtgaagaggagagaaggagaaggagtgaaagaaagggaaaggtggagaggagagggaaagagagggaggggtggagAGGAGAGAACAGTTCCTTTTAAtcttatcattttatttttgaagtatacaccatttttttacagtattattaatttcagattgtttaaatattttccgTTTCATAGCTCTTTTTACAGCCAGTTCTGAGGACTTGTCAGGTGTTAATCAGTGCTACTGTGCTTAAACCATTGTTTCTGTCTGTATGAGttcaacattaaatatttaaactga

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU66358 True 1211 TUCP 0.39 2 16613224 16614461

Neighbor

gene id symbol gene type direction distance location
AMCG00008980 NA coding downstream 93658 16478788 ~ 16519566 (-)
AMCG00008975 NA coding downstream 274516 16336415 ~ 16338708 (-)
AMCG00008976 LOC107551165 coding downstream 290593 16319368 ~ 16322631 (-)
AMCG00008977 LOC106517428,LOC102198306 coding downstream 314968 16293316 ~ 16298256 (-)
AMCG00008974 LOC107730758,LOC105891716 coding downstream 323852 16273804 ~ 16289372 (-)
AMCG00008987 NA coding upstream 168318 16782779 ~ 16784022 (-)
AMCG00008992 NA coding upstream 355771 16970232 ~ 16989426 (-)
AMCG00008994 NA coding upstream 590629 17205090 ~ 17220441 (-)
AMCG00008998 scaf1,phrf1,LOC107580000 coding upstream 987371 17601832 ~ 17611358 (-)
AMCG00009000 NA coding upstream 1001267 17615728 ~ 17626783 (-)
G52999 NA non-coding downstream 71669 16541268 ~ 16541555 (-)
G52944 NA non-coding downstream 250345 16362622 ~ 16362879 (-)
G52938 NA non-coding downstream 260924 16352012 ~ 16352300 (-)
G52929 NA non-coding downstream 299239 16311392 ~ 16313985 (-)
G52918 NA non-coding downstream 359085 16238758 ~ 16254139 (-)
G53042 NA non-coding upstream 59248 16673709 ~ 16729192 (-)
G53096 NA non-coding upstream 133390 16747851 ~ 16750617 (-)
G53102 NA non-coding upstream 218870 16833331 ~ 16837563 (-)
G53127 NA non-coding upstream 387549 17002010 ~ 17002218 (-)
G53134 NA non-coding upstream 425646 17040107 ~ 17040680 (-)
G52951 NA other downstream 208098 16404710 ~ 16405126 (-)
AMCG00008971 NA other downstream 539289 16063554 ~ 16073935 (-)
G52834 NA other downstream 649607 15957667 ~ 15963617 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other downstream 761414 15834040 ~ 15851810 (-)
G52782 NA other downstream 775423 15836989 ~ 15837801 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 209334 16823795 ~ 16913299 (-)
AMCG00009001 NA other upstream 1110258 17724719 ~ 17747043 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other upstream 1253925 17868386 ~ 17868696 (-)
AMCG00009029 NA other upstream 3346566 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 3447063 20061524 ~ 20062179 (-)

Expression


Co-expression Network