G53025 (LOC100846954,LOC107575789)


Basic Information

Item Value
gene id G53025
gene name LOC100846954,LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16654193 ~ 16654923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66368
gaaaaaagtatttgatcccctggtgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaacaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacatttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcaagactgatgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttctacgcttcttcttgagccactcctttgttgcattggctgtgtgttttgggtcactgtcatgctggaatacccatccacgacccattttcaataccctggctgagggaaggaggttctcacccaagatttgaagGTTCGTGGCCCCGTCCAttgtccctttgatgcggttcagttgtcctgtccccttagcagaaaaacacccccaaagtataatgtttccacctccatgtttgacggtgagggtggtgttcttggggtcataggcagcattcctcctcctccaaacatggCGAGTTG

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66368 True 731 lncRNA 0.45 1 16654193 16654923

Neighbor

gene id symbol gene type direction distance location
AMCG00008982 NA coding upstream 51949 16599660 ~ 16602244 (+)
AMCG00008979 NA coding upstream 89958 16561022 ~ 16564235 (+)
AMCG00008981 NA coding upstream 95235 16547617 ~ 16558958 (+)
AMCG00008978 LOC108432681,LOC102199411,LOC102296518 coding upstream 202942 16430817 ~ 16451251 (+)
AMCG00008972 NA coding upstream 520133 16126141 ~ 16134060 (+)
AMCG00008984 NA coding downstream 5069 16659992 ~ 16671430 (+)
AMCG00008991 NA coding downstream 143151 16798074 ~ 16798529 (+)
AMCG00008990 NA coding downstream 144676 16799599 ~ 16842718 (+)
AMCG00008993 NA coding downstream 506162 17161085 ~ 17161541 (+)
AMCG00008996 NA coding downstream 768523 17423446 ~ 17453217 (+)
G52946 NA non-coding upstream 257712 16396280 ~ 16396481 (+)
G52945 NA non-coding upstream 284779 16369172 ~ 16369414 (+)
G52933 NA non-coding upstream 309515 16344256 ~ 16344678 (+)
G52931 NA non-coding upstream 310117 16343016 ~ 16344076 (+)
G52896 NA non-coding upstream 334341 16311392 ~ 16319852 (+)
G53069 NA non-coding downstream 180689 16835612 ~ 16858245 (+)
G53115 NA non-coding downstream 303590 16958513 ~ 16959031 (+)
G53128 NA non-coding downstream 354599 17009522 ~ 17009721 (+)
G53131 NA non-coding downstream 364762 17019685 ~ 17019964 (+)
G53137 NA non-coding downstream 392091 17047014 ~ 17048098 (+)
AMCG00008983 NA other upstream 66812 16579863 ~ 16587381 (+)
G52942 NA other upstream 291682 16362102 ~ 16362511 (+)
AMCG00008965 NA other upstream 744042 15895430 ~ 15910151 (+)
AMCG00008960 rps11,rs11 other upstream 790523 15856224 ~ 15863670 (+)
AMCG00008931 pp12c,LOC106564933 other upstream 1633347 14982573 ~ 15020846 (+)
G53028 NA other downstream 17580 16672503 ~ 16673542 (+)
AMCG00008985 NA other downstream 24902 16679825 ~ 16726295 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other downstream 76466 16731389 ~ 16737499 (+)
AMCG00008986 shank1,LOC108427331 other downstream 91764 16746687 ~ 16750798 (+)
AMCG00008995 NA other downstream 675969 17330892 ~ 17343676 (+)

Expression


Co-expression Network