G53137


Basic Information

Item Value
gene id G53137
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17047014 ~ 17048098 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66508
CAGACCGGGTGATTGGATGCCGCCGCTTGGAGATTATCTGGGCGAGTTAACAATAGAGCTAGACCCCCAAGATCACATCGTagagtttgttttgcttataaAACAGCTTCAGGAAAGAGCTGTATGAAGGTGAAAGGTATAACTTTGAATCACACTAACAAGAAACTGATCAATATCAAGTCTCTAACGACTTTGGTTCAAAATTATGTTGCAGGCCTAGATCAAGGAATTCAACCTCAAGAGGTGATTACTTCCGGAAATCAGATTGTCCGAAATAATAAGGTGTACACTCTCGAAAACAGGCCACTACAGAAAAGGTTTCGGGTAGAGTACAACAAAAGAGTTCTTTTGCCAGACTATAATACGCTACCCTGTGGATATTGACGGGGGATTCGATAACAGACTTCAACAccccttttcatgtattatatcaGGTCCTTCCAATTCTggtaaaagtttttttcttaaaaggctTTTAGAGAATTCTGCAACGGCTATAACACAAACTCTCGATAACATAGTTTGGTGTTACTCATGTTGGCAACCTCTGTACGATGAGCTaatggttaaaattaaaaatcttaaatttgtgGAAGGTGTCCCCGCATCGCTTTGTGATGATGATTTGTTACCCagtgacaaatgcaatttaatagtGATAGACGATCTCATGGAAACGGCTAGTGACAATAGCGAAGTGGAGaaagcttttacaaaatatacacaccatAGAAATTTGAGCATCGTCTATCtagttaaacaaatattttttcaaggtaaaaagAGTCGAATGatcaatttaaatgctaattattCTTTTCAAAAATCCTAGAGATAAGCTGCAGGTGTACACTTTGGCCCGGCAAATGTACCCCAGACAATCTAAATTCTTTTTGGAATCGTTCGAAGACGCGACTAAAAACCCTTACGGATACTTGCTAGTGGATTTAAAAGCGCAAACTCCCGAAGACTATCGACTCAGAGTGGGTTTGCTGCCCCCAGATTTGCCTGTAGTCTACGTGCTAaagaggagaaataaaaaatagaatgtcgGCTAGGATAAGAAGAAACCTACCGCTTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66508 True 1085 lncRNA 0.39 1 17047014 17048098

Neighbor

gene id symbol gene type direction distance location
AMCG00008990 NA coding upstream 204296 16799599 ~ 16842718 (+)
AMCG00008991 NA coding upstream 248485 16798074 ~ 16798529 (+)
AMCG00008984 NA coding upstream 375584 16659992 ~ 16671430 (+)
AMCG00008982 NA coding upstream 444770 16599660 ~ 16602244 (+)
AMCG00008979 NA coding upstream 482779 16561022 ~ 16564235 (+)
AMCG00008993 NA coding downstream 112987 17161085 ~ 17161541 (+)
AMCG00008996 NA coding downstream 375348 17423446 ~ 17453217 (+)
AMCG00008997 NA coding downstream 444383 17492481 ~ 17601018 (+)
AMCG00009003 NA coding downstream 740422 17788520 ~ 17796297 (+)
AMCG00009005 NA coding downstream 771502 17819600 ~ 17829383 (+)
G53131 NA non-coding upstream 27050 17019685 ~ 17019964 (+)
G53128 NA non-coding upstream 37293 17009522 ~ 17009721 (+)
G53115 NA non-coding upstream 87983 16958513 ~ 16959031 (+)
G53069 NA non-coding upstream 188769 16835612 ~ 16858245 (+)
G53025 LOC100846954,LOC107575789 non-coding upstream 392091 16654193 ~ 16654923 (+)
G53139 NA non-coding downstream 3375 17051473 ~ 17051675 (+)
G53155 NA non-coding downstream 60981 17109079 ~ 17109684 (+)
G53157 NA non-coding downstream 64018 17112116 ~ 17113008 (+)
G53176 NA non-coding downstream 263370 17311468 ~ 17311668 (+)
G53178 NA non-coding downstream 270193 17318291 ~ 17318510 (+)
AMCG00008986 shank1,LOC108427331 other upstream 296216 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 309515 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 320719 16679825 ~ 16726295 (+)
G53028 NA other upstream 373472 16672503 ~ 16673542 (+)
AMCG00008983 NA other upstream 459633 16579863 ~ 16587381 (+)
AMCG00008995 NA other downstream 282794 17330892 ~ 17343676 (+)
G53298 mybpc2 other downstream 681268 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 869450 17917548 ~ 17920592 (+)
G53520 NA other downstream 1502674 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 2479799 19527897 ~ 19547507 (+)

Expression


Co-expression Network