G53178


Basic Information

Item Value
gene id G53178
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17318291 ~ 17318510 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66553
AATCAACACACACCCTAAAAATATGCCCGGAGAACATTGGCTGGCTATTTATCTAAGGGAGGACCACCGTGGTGAATTTTTTGATTCCTATGGAAACCCCCCGGATTTCAGACCTTTCCCTCGGAAGATCAATAACTTTCTGCTCAACAACTGTCAAGAAACCATTTACAGCGGTCGTCAAGTACAAAGTCTACAGACCTTCACTTGTGgtcaacactgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66553 True 220 lncRNA 0.44 1 17318291 17318510

Neighbor

gene id symbol gene type direction distance location
AMCG00008993 NA coding upstream 156750 17161085 ~ 17161541 (+)
AMCG00008990 NA coding upstream 475573 16799599 ~ 16842718 (+)
AMCG00008991 NA coding upstream 519762 16798074 ~ 16798529 (+)
AMCG00008984 NA coding upstream 646861 16659992 ~ 16671430 (+)
AMCG00008982 NA coding upstream 716047 16599660 ~ 16602244 (+)
AMCG00008996 NA coding downstream 104936 17423446 ~ 17453217 (+)
AMCG00008997 NA coding downstream 173971 17492481 ~ 17601018 (+)
AMCG00009003 NA coding downstream 470010 17788520 ~ 17796297 (+)
AMCG00009005 NA coding downstream 501090 17819600 ~ 17829383 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding downstream 513433 17831943 ~ 17845668 (+)
G53176 NA non-coding upstream 6623 17311468 ~ 17311668 (+)
G53157 NA non-coding upstream 205283 17112116 ~ 17113008 (+)
G53155 NA non-coding upstream 208607 17109079 ~ 17109684 (+)
G53139 NA non-coding upstream 266616 17051473 ~ 17051675 (+)
G53137 NA non-coding upstream 270193 17047014 ~ 17048098 (+)
G53180 NA non-coding downstream 2460 17320970 ~ 17321222 (+)
G53223 NA non-coding downstream 208709 17527219 ~ 17527433 (+)
G53224 NA non-coding downstream 208968 17527478 ~ 17613616 (+)
G53254 NA non-coding downstream 308388 17626898 ~ 17628315 (+)
G53255 NA non-coding downstream 319651 17638161 ~ 17638374 (+)
AMCG00008986 shank1,LOC108427331 other upstream 567493 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 580792 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 591996 16679825 ~ 16726295 (+)
G53028 NA other upstream 644749 16672503 ~ 16673542 (+)
AMCG00008983 NA other upstream 730910 16579863 ~ 16587381 (+)
AMCG00008995 NA other downstream 12382 17330892 ~ 17343676 (+)
G53298 mybpc2 other downstream 410856 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 599038 17917548 ~ 17920592 (+)
G53520 NA other downstream 1232262 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 2209387 19527897 ~ 19547507 (+)

Expression


Co-expression Network