G53180


Basic Information

Item Value
gene id G53180
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17320970 ~ 17321222 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66555
TTagcattgtgtgcaataaatgtgtaattgaggTATTTTGGACCGCGATACCGTGTAAAGAAATCCCTGACACAACTCTCACTGCTGGCTGACCACTCATGATCCAACATATCAATACAGTGGATATAATTAGCAAAGTGGACCCCGTTTTCTTGccgacattcaaaatcaaaaaagacatACCGGTTGTGCGGCAGTTCCTTTTTAACCGGCTGAATAAAGCACTGGTGCTCGGACCCCGGGGTTAAATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66555 True 253 lncRNA 0.44 1 17320970 17321222

Neighbor

gene id symbol gene type direction distance location
AMCG00008993 NA coding upstream 159429 17161085 ~ 17161541 (+)
AMCG00008990 NA coding upstream 478252 16799599 ~ 16842718 (+)
AMCG00008991 NA coding upstream 522441 16798074 ~ 16798529 (+)
AMCG00008984 NA coding upstream 649540 16659992 ~ 16671430 (+)
AMCG00008982 NA coding upstream 718726 16599660 ~ 16602244 (+)
AMCG00008996 NA coding downstream 102224 17423446 ~ 17453217 (+)
AMCG00008997 NA coding downstream 171259 17492481 ~ 17601018 (+)
AMCG00009003 NA coding downstream 467298 17788520 ~ 17796297 (+)
AMCG00009005 NA coding downstream 498378 17819600 ~ 17829383 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding downstream 510721 17831943 ~ 17845668 (+)
G53178 NA non-coding upstream 2460 17318291 ~ 17318510 (+)
G53176 NA non-coding upstream 9302 17311468 ~ 17311668 (+)
G53157 NA non-coding upstream 207962 17112116 ~ 17113008 (+)
G53155 NA non-coding upstream 211286 17109079 ~ 17109684 (+)
G53139 NA non-coding upstream 269295 17051473 ~ 17051675 (+)
G53223 NA non-coding downstream 205997 17527219 ~ 17527433 (+)
G53224 NA non-coding downstream 206256 17527478 ~ 17613616 (+)
G53254 NA non-coding downstream 305676 17626898 ~ 17628315 (+)
G53255 NA non-coding downstream 316939 17638161 ~ 17638374 (+)
G53290 NA non-coding downstream 353392 17674614 ~ 17685760 (+)
AMCG00008986 shank1,LOC108427331 other upstream 570172 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 583471 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 594675 16679825 ~ 16726295 (+)
G53028 NA other upstream 647428 16672503 ~ 16673542 (+)
AMCG00008983 NA other upstream 733589 16579863 ~ 16587381 (+)
AMCG00008995 NA other downstream 9670 17330892 ~ 17343676 (+)
G53298 mybpc2 other downstream 408144 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 596326 17917548 ~ 17920592 (+)
G53520 NA other downstream 1229550 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 2206675 19527897 ~ 19547507 (+)

Expression


Co-expression Network