G53290


Basic Information

Item Value
gene id G53290
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17674614 ~ 17685760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66678
tggagggagctgaaggtttgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagttgaaggggtcaaatacttatttccctcattaacatgcaaatcaatgtataactttttttaaatgcatttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttcccccactgtagacaggtgtgtgcctttccaaatcatgtccaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcagtggaaacaggatgcacctgagctcaattttgag

Function

NR:

description
PREDICTED: nucleobindin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66678 True 516 lncRNA 0.41 2 17674614 17685760

Neighbor

gene id symbol gene type direction distance location
AMCG00008997 NA coding upstream 73596 17492481 ~ 17601018 (+)
AMCG00008996 NA coding upstream 221397 17423446 ~ 17453217 (+)
AMCG00008993 NA coding upstream 513073 17161085 ~ 17161541 (+)
AMCG00008990 NA coding upstream 831896 16799599 ~ 16842718 (+)
AMCG00008991 NA coding upstream 876085 16798074 ~ 16798529 (+)
AMCG00009003 NA coding downstream 102760 17788520 ~ 17796297 (+)
AMCG00009005 NA coding downstream 133840 17819600 ~ 17829383 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding downstream 146183 17831943 ~ 17845668 (+)
AMCG00009002 LOC103358380 coding downstream 178049 17863809 ~ 17868958 (+)
AMCG00009007 NA coding downstream 213318 17899078 ~ 17915696 (+)
G53255 NA non-coding upstream 36240 17638161 ~ 17638374 (+)
G53254 NA non-coding upstream 46299 17626898 ~ 17628315 (+)
G53224 NA non-coding upstream 60998 17527478 ~ 17613616 (+)
G53223 NA non-coding upstream 147181 17527219 ~ 17527433 (+)
G53180 NA non-coding upstream 353392 17320970 ~ 17321222 (+)
G53288 NA non-coding downstream 46854 17732614 ~ 17734816 (+)
G53299 NA non-coding downstream 50830 17736590 ~ 17736924 (+)
G53300 NA non-coding downstream 54784 17740544 ~ 17746936 (+)
G53352 NA non-coding downstream 183236 17868996 ~ 17870467 (+)
G53354 NA non-coding downstream 184747 17870507 ~ 17871066 (+)
AMCG00008995 NA other upstream 330938 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 923816 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 937115 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 948319 16679825 ~ 16726295 (+)
G53028 NA other upstream 1001072 16672503 ~ 16673542 (+)
G53298 mybpc2 other downstream 43606 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 231788 17917548 ~ 17920592 (+)
G53520 NA other downstream 865012 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1842137 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2691035 20376795 ~ 20396356 (+)

Expression


Co-expression Network