G53354


Basic Information

Item Value
gene id G53354
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17870507 ~ 17871066 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66750
gacagagaaagggtAAGAGAATGGGTAAGCTTTGCGAGGAGACTGTtagagttgtgtttttttggataataataataataataataataataataataataataataataataataataatattccttTGTAGAGTTGTACCATTGaagctgacacactgactgaccgatTAACACACTGAccaactgacacactgactgactgacacactgactgacttactggcacactgactgacacactgcctgactgactgactgactgactgagtgactctttatttgaaatgtttgaaatccaGTTCTAGAGTTAtctataataatatgaataacaaatatTACAGCAATTAGAGCAACtctctttttccctctctccctctttctccctctctccttctttctccctATCTCCCCCCTCTATCTCACTCTCTTCCCTTCTGCAgataatcaaattatattattttatattgtaatcaAAGTCAAGAGACAGCAGGGAGAAGAGAATATACcgttatattaaaattattcagCTGCAATTTAAGGAATATTTcctcagtattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66750 True 560 lncRNA 0.35 1 17870507 17871066

Neighbor

gene id symbol gene type direction distance location
AMCG00009002 LOC103358380 coding upstream 1549 17863809 ~ 17868958 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding upstream 24839 17831943 ~ 17845668 (+)
AMCG00009005 NA coding upstream 41124 17819600 ~ 17829383 (+)
AMCG00009003 NA coding upstream 74210 17788520 ~ 17796297 (+)
AMCG00008997 NA coding upstream 269489 17492481 ~ 17601018 (+)
AMCG00009007 NA coding downstream 28012 17899078 ~ 17915696 (+)
AMCG00009010 NA coding downstream 104968 17976034 ~ 18004741 (+)
AMCG00009008 NA coding downstream 142640 18013706 ~ 18022319 (+)
AMCG00009006 ect2,LOC107593151 coding downstream 165728 18036794 ~ 18040961 (+)
AMCG00009014 NA coding downstream 348006 18219072 ~ 18220253 (+)
G53352 NA non-coding upstream 40 17868996 ~ 17870467 (+)
G53300 NA non-coding upstream 123571 17740544 ~ 17746936 (+)
G53299 NA non-coding upstream 133583 17736590 ~ 17736924 (+)
G53288 NA non-coding upstream 135691 17732614 ~ 17734816 (+)
G53290 NA non-coding upstream 184747 17674614 ~ 17685760 (+)
G53353 NA non-coding downstream 363 17871429 ~ 17872667 (+)
G53358 NA non-coding downstream 1736 17872802 ~ 17874655 (+)
G53366 NA non-coding downstream 13415 17884481 ~ 17884687 (+)
G53406 NA non-coding downstream 206605 18077671 ~ 18077878 (+)
G53409 NA non-coding downstream 212738 18083804 ~ 18084038 (+)
G53298 mybpc2 other upstream 139847 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 526831 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1119709 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1133008 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 1144212 16679825 ~ 16726295 (+)
AMCG00009009 NA other downstream 46482 17917548 ~ 17920592 (+)
G53520 NA other downstream 679706 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1656831 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2505729 20376795 ~ 20396356 (+)
G53911 NA other downstream 3297165 21168231 ~ 21168575 (+)

Expression


Co-expression Network