G53355 (lrrc4b,LOC107677294,LOC107556667)


Basic Information

Item Value
gene id G53355
gene name lrrc4b,LOC107677294,LOC107556667
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17868386 ~ 17868696 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66751
CCCCCAAGCTCGTCCTCCACGTTGATGATCTCGATGGCACGGGCTGGGCCATGGTGCTTGTGCAGCTGGTGCTGTTTGCGCAGCTTGTAGAAGACCACCAGCATGACGGCAGCCATGAAGGTGATGGCGACGAAGCAGCCAATGATGATCTTGGTCGTCTTCATGACGTCGTCCAAGCCGGACACGTTTTCGGATATTTCGGTGACAGGCACGGTGAAGGCCCTCTCAGTGGAGCGGGGCGAGCGTGAGGAGGAGGCCGAGGCCGAGGCGGCAGCGGGGGAGTGGGAGAGGGccgaggaggaggtggtggc

Function

symbol description
lrrc4b Predicted to enable signaling receptor binding activity. Predicted to be involved in regulation of synapse assembly and synaptic membrane adhesion. Predicted to be located in cerebellar mossy fiber and presynaptic membrane. Predicted to be active in glutamatergic synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66751 True 311 TUCP 0.63 1 17868386 17868696

Neighbor

gene id symbol gene type direction distance location
AMCG00008999 NA coding downstream 203650 17655595 ~ 17664736 (-)
AMCG00009000 NA coding downstream 241603 17615728 ~ 17626783 (-)
AMCG00008998 scaf1,phrf1,LOC107580000 coding downstream 257028 17601832 ~ 17611358 (-)
AMCG00008994 NA coding downstream 647945 17205090 ~ 17220441 (-)
AMCG00008992 NA coding downstream 878960 16970232 ~ 16989426 (-)
AMCG00009015 NA coding upstream 282167 18150863 ~ 18151365 (-)
AMCG00009012 NA coding upstream 307199 18175895 ~ 18208537 (-)
AMCG00009013 NA coding upstream 355151 18223847 ~ 18253002 (-)
AMCG00009011 LOC105011705,LOC106613920 coding upstream 403922 18272618 ~ 18288172 (-)
AMCG00009018 eif4a2,LOC107103884,LOC107593804 coding upstream 508738 18377434 ~ 18382391 (-)
G53286 NA non-coding downstream 213178 17654125 ~ 17655208 (-)
G53188 NA non-coding downstream 524604 17343442 ~ 17343782 (-)
G53156 NA non-coding downstream 758675 17109061 ~ 17109711 (-)
G53147 NA non-coding downstream 786321 17081678 ~ 17082065 (-)
G53142 NA non-coding downstream 806835 17060808 ~ 17061551 (-)
G53411 NA non-coding upstream 215551 18084247 ~ 18084482 (-)
G53425 NA non-coding upstream 234026 18102722 ~ 18113638 (-)
G53428 NA non-coding upstream 262784 18131480 ~ 18131785 (-)
G53478 NA non-coding upstream 438741 18307437 ~ 18307999 (-)
G53543 NA non-coding upstream 733017 18601713 ~ 18601951 (-)
AMCG00009001 NA other downstream 121343 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 955087 16823795 ~ 16913299 (-)
G53017 NA other downstream 1253925 16613224 ~ 16614461 (-)
G52951 NA other downstream 1463260 16404710 ~ 16405126 (-)
AMCG00008971 NA other downstream 1794451 16063554 ~ 16073935 (-)
AMCG00009029 NA other upstream 2092331 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 2192828 20061524 ~ 20062179 (-)
G53809 NA other upstream 2311103 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 4314392 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 5956533 23825229 ~ 23863035 (-)

Expression


Co-expression Network