G53358


Basic Information

Item Value
gene id G53358
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17872802 ~ 17874655 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66754
TTGGATGGAAATGTGCCAAATGTGCAGAGTGCCAAACTGCAGTGACAGGACTCTacagaataaacacaatcttgttgttttgtacaaaatacatgtaacacacaatgcctctgtgtgtgtgtgtgtgtgtgtgtgtgaatgagagtgtatgtatatgagtgtctgtgtgtgtgtgagggaggtGTCAGTACGTATGTTTGTGTGTCAATCAATCggtccatttatttttagttttagttcactttatttggttttgtaagAATCATTTGAGAGTTTTTGACATGTGTTTGGCAACAGTGCTAGtgatcagacagacagacaaacagagaccACAGAATgacacagaggaagagagacacacagaccacaTACTGACACAGACAGCCAGACAGAGAGACAACTAGACAGAGCCCACAGactgacacaaacagacagacctAGAGAAAGAGATACAcaagacagatagacagagaccacagactgacacagagacagacacagaatgACACTGATAGAGTGAGACACAAACAGACTGACACAATgacagaaagaaacacaataattaacattaacaacaaacagacaaatacagagggactcacaaacacacacagatagacacacagagagacacagatacacacagagagaatcacacacagacagacacagacactagAGAGCGAgttattaatgattattttttacatcTGAAAGGTCAATTCTTGCAGATGGATGGAATCTCAatacctctctccctctttccctctctctctgcagtagAACAGGAAAACAAGGCTGATTAAGGAGTAACCTTGGTGACGATGAACATCTCAGCCATCCCATAATAACCTCAGGCtccactacacacacatacatacacatctCACACATCTCTCTATCTCCTTCTGAATCTGAGTGTCTAAAATTTACATAGAATAGAAAATTGTGCTTGTGTACTTACTACAgatagtcagtcagtgtgtcagtcagtcagtgtatcagtcacaCCGACTGCCGACTGCCTTGTCAGTCATTTACTgtagaaatactgtactgtaggcAGACACTGTAGAGACACTAGAGACACTATAGGCACTGTAGAGACACTAGACAGAGACATCTTTGCTTAATGAACGAGGGGATGGAGAGACAGAAGAGACAGCAGCTCACAGAGATCGATGGATGCCTATTAAAAGAACAGATCTTTTTGCTtgtgggcagagagagggaaggtgggggggagagggggacagaggaATAAATATTCAGTCAGAGAGCACTGAGGGTGCATTAGTATTATTCAcacattcctctctctccctctctctctttctgtctccccTCCCCTGTTCTCCCCCTCCCCGCTCTTTCTCTCTAGCGCTGCAGCGTTACCATGGTGACAAAGATGTCTGGGAATACCTCTGTCCttcagagagagcgagaaagagggagggggttCAATACAGTACACACTCACGCTCTGACTGagcgactgactgactgactggacactacggTACAACAGccactgagggagagggagagggtgaagAGGGAAGGAAAGTAGGAATCCTTATCTATCTATCAGTCTGTTTATCTCTGTGTGTCCTAATCTGTtaatctcaaaataaaatatatcactcTATCTTAATCTATATAAGCATCTCtcgccctccctccctctctccctctctccctgttgCATGCATCTCCATTTTTGCAGACTAGGCtgttgtttccatgacaacctGTAGCCGAAAATagcccccctttctctctcccaccctcCTTCTTCTCTAGgtttctccctcctctctccatcatttcctctttccccccctctctcttcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66754 True 1854 lncRNA 0.44 1 17872802 17874655

Neighbor

gene id symbol gene type direction distance location
AMCG00009002 LOC103358380 coding upstream 3844 17863809 ~ 17868958 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding upstream 27134 17831943 ~ 17845668 (+)
AMCG00009005 NA coding upstream 43419 17819600 ~ 17829383 (+)
AMCG00009003 NA coding upstream 76505 17788520 ~ 17796297 (+)
AMCG00008997 NA coding upstream 271784 17492481 ~ 17601018 (+)
AMCG00009007 NA coding downstream 24423 17899078 ~ 17915696 (+)
AMCG00009010 NA coding downstream 101379 17976034 ~ 18004741 (+)
AMCG00009008 NA coding downstream 139051 18013706 ~ 18022319 (+)
AMCG00009006 ect2,LOC107593151 coding downstream 162139 18036794 ~ 18040961 (+)
AMCG00009014 NA coding downstream 344417 18219072 ~ 18220253 (+)
G53353 NA non-coding upstream 135 17871429 ~ 17872667 (+)
G53354 NA non-coding upstream 1736 17870507 ~ 17871066 (+)
G53352 NA non-coding upstream 2335 17868996 ~ 17870467 (+)
G53300 NA non-coding upstream 125866 17740544 ~ 17746936 (+)
G53299 NA non-coding upstream 135878 17736590 ~ 17736924 (+)
G53366 NA non-coding downstream 9826 17884481 ~ 17884687 (+)
G53406 NA non-coding downstream 203016 18077671 ~ 18077878 (+)
G53409 NA non-coding downstream 209149 18083804 ~ 18084038 (+)
G53410 NA non-coding downstream 209663 18084318 ~ 18084530 (+)
G53414 NA non-coding downstream 221575 18096230 ~ 18098551 (+)
G53298 mybpc2 other upstream 142142 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 529126 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1122004 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1135303 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 1146507 16679825 ~ 16726295 (+)
AMCG00009009 NA other downstream 42893 17917548 ~ 17920592 (+)
G53520 NA other downstream 676117 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1653242 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2502140 20376795 ~ 20396356 (+)
G53911 NA other downstream 3293576 21168231 ~ 21168575 (+)

Expression


Co-expression Network