G53409


Basic Information

Item Value
gene id G53409
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18083804 ~ 18084038 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66817
CTCTCTATTCATTAGCAGAAATGTTCAACAAAGTTCATTCACCCCAATTTATATACTGTAAGTGTAATTTATCAAATACAATTAGCGATATGAACAtgactgtttaaaacaaacttacatattaaacaaactTGAAGCATTACGTAAATgttacatgtattatatatatatttttttaaattcaactgGAGAAAAACTGGACACGTTACTAATACCCCTTCCCACACATCCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66817 True 235 lncRNA 0.29 1 18083804 18084038

Neighbor

gene id symbol gene type direction distance location
AMCG00009006 ect2,LOC107593151 coding upstream 42843 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 61485 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 79063 17976034 ~ 18004741 (+)
AMCG00009007 NA coding upstream 168108 17899078 ~ 17915696 (+)
AMCG00009002 LOC103358380 coding upstream 214846 17863809 ~ 17868958 (+)
AMCG00009014 NA coding downstream 135034 18219072 ~ 18220253 (+)
AMCG00009016 rfc4,LOC103355474 coding downstream 277488 18361526 ~ 18374268 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1777240 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1855038 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 2179037 20263075 ~ 20263866 (+)
G53406 NA non-coding upstream 5926 18077671 ~ 18077878 (+)
G53366 NA non-coding upstream 199117 17884481 ~ 17884687 (+)
G53358 NA non-coding upstream 209149 17872802 ~ 17874655 (+)
G53353 NA non-coding upstream 211137 17871429 ~ 17872667 (+)
G53354 NA non-coding upstream 212738 17870507 ~ 17871066 (+)
G53410 NA non-coding downstream 280 18084318 ~ 18084530 (+)
G53414 NA non-coding downstream 12192 18096230 ~ 18098551 (+)
G53415 NA non-coding downstream 14978 18099016 ~ 18099647 (+)
G53451 LOC100846954 non-coding downstream 275385 18359423 ~ 18398807 (+)
G53454 NA non-coding downstream 304361 18388399 ~ 18389424 (+)
AMCG00009009 NA other upstream 163212 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 353144 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 740128 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1333006 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1346305 16731389 ~ 16737499 (+)
G53520 NA other downstream 466734 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1443859 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2292757 20376795 ~ 20396356 (+)
G53911 NA other downstream 3084193 21168231 ~ 21168575 (+)
G53915 NA other downstream 3190573 21274611 ~ 21275354 (+)

Expression


Co-expression Network