G53414


Basic Information

Item Value
gene id G53414
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18096230 ~ 18098551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66822
gtttacacaaagggcaaaaaagaaaagacctACAGAGAATTCACATCATTCAATATATTCGCTAAAGTATTGACtttttcatttaagaaaaaatacgGGACGAAGCAAGAATTTTAAGttacaaaatgaacaaaggATGGGGGGGTTCAAAAATCTGCACTTGTGAACAAAGAATTtagtaattataaaaatgttgttgGCCAAATAGTGTTGTGTACAATCTTTCTTGAGTACACCAAATCTAATTTGTTCATAACTAATGGTGTTTACATGAATATTGATGTAAGACAagggtagtcaataggcggcCCGCAGGCCAAATCCGGCCCGCCAGACACTTTTGACTGAACCACgagaatcattttaattaagtttttatcATGATTTTACGTAAGTAatgttacggaggtttgttgcactcagtgcttgttatagtgtggaacctagtcgcagcaattcctggttattagccaataggatgttacgtattaatatgggatgtcctatatagagctagtGTTCCCTTTAGTTGGTTAGTTagttgattgctcgcagattccCTGTTCGGTTGTCTCTGTACacattctggactggggcaagagcggcactttgtacttgtcaaaaaaacaaaacaaaaacaggtattcggttttcctgatttctataaataagcagctaaaatgtgcatCGCTTGTTGTGTGGAAATATGTCAACCTCatctctaaaatataaaagtgcatacacacgacCGGGGGGTGCACGGTGCCTTAGCTTGCGTTCACCTAGAAACTCAGGGGtggaaacagcttatttccaatgcagacgcatatttctagcatgCGCGCAAATCaagaattgtgcatcctcacccgtttcaattacagagacccaccgaaatagatctgtgattgcaAGCACGAGAAACCGCGTCTAGTTAACAtgtataatgttggttgatatgGGATTTTTCGCTGGTGTTATGTGGagcaaagatatgtttaagtccaaatctgcctgatttcatggagattttgagctatgttttttgacttcgaaatgactcaaATGAAATTACTCAAATCATTtgactttgtcaaatgaatgtactaaattataagcaacggggtatattactaattcacagaattgtgtgtgtgtgtgttggaaaggggcatttgaaggtgtgacCCACCCAATGtatggaccttgactataccttgaccaagaaatttggacccagacacaaaataattgactaccccccAGCCTTGAATGGTTACAGCCAAAGAATATGTGCTCAGTGGATTCAATGTCATATTCACAGAATTGACAAGAATTTTCCCAAATACCAAATACCAATACCAAATTTTGACCTAAGGAATTCCTTAGACGGATAAatgtcattcattattttgaagtgAAGTTCTTTCATTTTTGGAAGTATTGAAGGGGTGGCGAACGTATACGGCccctgaggctgtttgctccAGCCCAagagtccatttgaaaaaaaatatttctgtgacatacacgTAACACAAGAAGCACCgagcttatgtaataaacatctctactgcgttttaactgcataaacatgaaaataaataagttataaacacattagaatagccaaaatcgggtaaTTTTCAccggtcattaaaatacataactcaaatataacccataatcctttacaatacagtcagtctggcgctccggtggcgatctctacctgtctacagtttttcatgtgtttggaaaacatacacattgtacagcattacaggtgttttcttacaactgtggaaggaaagttagaaattctttctctcatacctgttttactctcttgtatatttaagaaagataaggtcaagctagaaggacagaccagaaggtagtttgatttctgtttgttatttacgatgagaatcttggagacaatgtcaaacagtatgattgaagtgcctgctccctaatccatatgttgatctatgaactctgtcctataatgatatatattctgcttagctaactctataagataatatagtaataaccatatctttgttttttgtgtataaaagcctctgacttttaaaatgaaggcagagtgACTTTggaatcttcttgattcactgttcctctccaatctgcatgtattaaaggcattgcaactaacgttccaacctgattgaagattgtTCTTCTTCCACACAACTGTACTccgattgagtggatacagtgattacactgcaaataaacatggatttgaaacggagattgaagaaatgccatgtatatgaacatgactgattcagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66822 True 2322 lncRNA 0.37 1 18096230 18098551

Neighbor

gene id symbol gene type direction distance location
AMCG00009006 ect2,LOC107593151 coding upstream 55269 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 73911 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 91489 17976034 ~ 18004741 (+)
AMCG00009007 NA coding upstream 180534 17899078 ~ 17915696 (+)
AMCG00009002 LOC103358380 coding upstream 227272 17863809 ~ 17868958 (+)
AMCG00009014 NA coding downstream 120521 18219072 ~ 18220253 (+)
AMCG00009016 rfc4,LOC103355474 coding downstream 262975 18361526 ~ 18374268 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1762727 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1840525 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 2164524 20263075 ~ 20263866 (+)
G53410 NA non-coding upstream 11700 18084318 ~ 18084530 (+)
G53409 NA non-coding upstream 12192 18083804 ~ 18084038 (+)
G53406 NA non-coding upstream 18352 18077671 ~ 18077878 (+)
G53366 NA non-coding upstream 211543 17884481 ~ 17884687 (+)
G53358 NA non-coding upstream 221575 17872802 ~ 17874655 (+)
G53415 NA non-coding downstream 465 18099016 ~ 18099647 (+)
G53451 LOC100846954 non-coding downstream 260872 18359423 ~ 18398807 (+)
G53454 NA non-coding downstream 289848 18388399 ~ 18389424 (+)
G53456 NA non-coding downstream 300811 18399362 ~ 18400842 (+)
G53458 eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852 non-coding downstream 302954 18401505 ~ 18402219 (+)
AMCG00009009 NA other upstream 175638 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 365570 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 752554 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1345432 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1358731 16731389 ~ 16737499 (+)
G53520 NA other downstream 452221 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1429346 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2278244 20376795 ~ 20396356 (+)
G53911 NA other downstream 3069680 21168231 ~ 21168575 (+)
G53915 NA other downstream 3176060 21274611 ~ 21275354 (+)

Expression


Co-expression Network