G53451 (LOC100846954)


Basic Information

Item Value
gene id G53451
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18359423 ~ 18398807 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66863
tctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaattggattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatctccaagcagcttggtgagaaggtgacaacagttggtgtgattattcgcaaatggaagaagtCTCCCTTGGTCTgaggctccatgcaagatctcacctcgtggagttacaatgatcatgagaacggtgcagaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaagGggcccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaacatctgaatgattcagaggagaactaggtaaaagtgttgtggtcagataagaccaaaatcgagctctttggcatcaactcaactcgccgtgttcggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaagtggacaggacaactgcaccgcatcaaagggacaatggatggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcaaattatagactgatcatttctttgtcattgaacaaa

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66863 True 875 lncRNA 0.48 2 18359423 18398807

Neighbor

gene id symbol gene type direction distance location
AMCG00009014 NA coding upstream 139170 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 318462 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 337104 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 354682 17976034 ~ 18004741 (+)
AMCG00009007 NA coding upstream 443727 17899078 ~ 17915696 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1462471 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1540269 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1864268 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 2057650 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2287338 20686145 ~ 20692387 (+)
G53415 NA non-coding upstream 259776 18099016 ~ 18099647 (+)
G53414 NA non-coding upstream 260872 18096230 ~ 18098551 (+)
G53410 NA non-coding upstream 274893 18084318 ~ 18084530 (+)
G53409 NA non-coding upstream 275385 18083804 ~ 18084038 (+)
G53406 NA non-coding upstream 281545 18077671 ~ 18077878 (+)
G53456 NA non-coding downstream 555 18399362 ~ 18400842 (+)
G53458 eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852 non-coding downstream 2698 18401505 ~ 18402219 (+)
G53493 NA non-coding downstream 10119 18408926 ~ 18410130 (+)
G53495 NA non-coding downstream 22045 18420852 ~ 18472277 (+)
G53496 NA non-coding downstream 28858 18427665 ~ 18429953 (+)
AMCG00009009 NA other upstream 438831 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 628763 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1015747 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1608625 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1621924 16731389 ~ 16737499 (+)
G53520 NA other downstream 151965 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1129090 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1977988 20376795 ~ 20396356 (+)
G53911 NA other downstream 2769424 21168231 ~ 21168575 (+)
G53915 NA other downstream 2875804 21274611 ~ 21275354 (+)

Expression


Co-expression Network