G53456


Basic Information

Item Value
gene id G53456
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18399362 ~ 18400842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66874
CTTCCTTAAAACAGTCTTCACCAAACTTGGATCACTCAAAATGTACAGAAGTTAACAAAACATTCCAATGTCTAGATAATTCCTGAGAGGAGGTAGTAAAAGTATTGAAACACAAACGGGTACCAgtcaatacaatttaaagcaCCACTCACTTGGATGTTTGTGCTTAATTTTTGGAAAATTTCATAGATTTGATCCTTGAACCCCCGACTCAACATTTCATCAGCCTCATCCAAAACAAACATCTTGATCCACTTTGGAGCTGTTCAAAGACAACAGAAGTTAAGTTGCAAGGTCACATGCATGTGGAAAATGTACAGcacatgtgcatgtgtgcacaGTCTACTGTGATCAGAGCTAAACTAAAGGGATTCTTCATTACTTAAAGTCTCAAAAAGATGATGCACCACCACTTTAACTTGAAGGTAGGGCTGTGCCGGTGACAGATTTTTGGCATCGATGTACCTTTGAAGAATTTACCACAGTGTTAAGTATTACGatcactgggggggggggactttgTTCCACTATTCTGAAGTAGGATAgtttttagattcaaataaatatttaaaaactatgtaACTTAATGTTTGAGTTGTTTAAGTGTTACAAACACATGCTTTCAGTTGTGTTTGGCGGTTCTGTGACAAAAATACTGACTTTAAACGATAATGGCATCGTAGCTACAGCgattcagaaataaaacctgGTCGCTTATGGTCTCATTTGATTTAGGTAGAATATTTAATGTCCTTCAACGATTCCAAAATGGTCTTTAAATCCTAGTTAGTTTTCAAcactttaatttcacccctTTTTAACTCCAGCTACAAGGCCGTAAACAGGCTTCCAACAGAAAGCCACCAATTGCGAGGCATCACTCCGTCAGCGTGTTTACATGGGGTGCGTTCACGTCACGCAGACTCATCATTCTTGCCAATGAATGCTCACACTTCCAAcggattctgtgcagaatgatcAAAGCATGCTTGTCAAACACAGGTAGCTCTAAAGTATTCAAAACATCAATGCGTGATATTTAACACTTAAAAGAAACTGATCTGCCTAGGAGGGGGCGAGTATTTGTAGAGTGGGAGGGGGGTGTGCCTGCATGTAGCTTAGTTTgtccaaaatgtaaaaatatcatGCAACGCTTGAGGTGGAGTCTCAATGCAAGAGACCCGCACACAATGCGTGACTTCAGAGctatgtatacaaacacacacctcctaTCCATGAGCACTTGCTCATGAAACAGCCACGATGGGGATTTCAACCACTTTACCACACCAGTGCAGTGACCTTACCACATCACAAATCTGGGAGGCTTCAGAATTGCTATCGTTTTGACAATTTTTATTTCCACCATAGTGAGGAGGTACTCTATTTACCAGCACAGCCCTACTTggaggagggagaaagagaggggggggaaaaaaaaaaaaaaaaaaaaaagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66874 True 1458 lncRNA 0.40 2 18399362 18400842

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 25094 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 179109 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 358401 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 377043 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 394621 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1460436 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1538234 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1862233 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 2055615 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2285303 20686145 ~ 20692387 (+)
G53451 LOC100846954 non-coding upstream 555 18359423 ~ 18398807 (+)
G53454 NA non-coding upstream 9938 18388399 ~ 18389424 (+)
G53415 NA non-coding upstream 299715 18099016 ~ 18099647 (+)
G53414 NA non-coding upstream 300811 18096230 ~ 18098551 (+)
G53410 NA non-coding upstream 314832 18084318 ~ 18084530 (+)
G53458 eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852 non-coding downstream 663 18401505 ~ 18402219 (+)
G53493 NA non-coding downstream 8084 18408926 ~ 18410130 (+)
G53495 NA non-coding downstream 20010 18420852 ~ 18472277 (+)
G53496 NA non-coding downstream 26823 18427665 ~ 18429953 (+)
G53517 NA non-coding downstream 127501 18528343 ~ 18536374 (+)
AMCG00009009 NA other upstream 478770 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 668702 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1055686 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1648564 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1661863 16731389 ~ 16737499 (+)
G53520 NA other downstream 149930 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1127055 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1975953 20376795 ~ 20396356 (+)
G53911 NA other downstream 2767389 21168231 ~ 21168575 (+)
G53915 NA other downstream 2873769 21274611 ~ 21275354 (+)

Expression


Co-expression Network