G53519


Basic Information

Item Value
gene id G53519
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18554959 ~ 18584509 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66947
CCTCTCCTTCCTCTGCTCCCAAGTCCCACCCCCGGCCCATCTCCTTGGCCAAGCCCTACGCCTGCACCCTCTGTAGCAAGAGCTTCAGCAAGCCTAGTGAGCTGGGCCGACACCAACGCATCCACACGGGGGAGAAGCCCTTCGCCTGCCCCCTGTGCCCCCGCCGCTTCACTGATGCCTCCAACGTCAAGGTCCATGCCCGTGTCCACACAGttacTCCAATTTGGGGATCCCAGATAACGAACGCATCCCTGAGAAGATCTAATGCTCCAGAATACCTCTGTGACGAGGCTGGTGCAACGATTTCAAGctCTGGAAGCACTGATAAACACTCCACCATGAACTGAAACTACTGGGGAATCAAGGAGGAGATCAGACTCGTATGACCGTGGAGTACCAAGtggatgaaaatgtaattgccagggaatgaaaaatgattgaaaatggaATCGACTCAAGTGGCTTTGGAATGCTTATAAACtaaatttaagaatatataatctaaatatgaaattataaatattcattttcttgtttttgtttttatcattaatataaaaaatacatgtatacataacTACACAATCCttacttttatatttgttatttttccactttaaaCCAACTTGCTCTAGGACCAGACGTgatcacattttacaaaactttaattaaatagccttttgtttttgtatgattaggagaaataaatacaatgttgtgAAGTGTGATAGGGGTgttgtcaaagttttgatcagGTGCTGCCCAGAgcctatacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66947 True 779 lncRNA 0.43 4 18554959 18584509

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 180691 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 334706 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 513998 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 532640 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 550218 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1276769 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1354567 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1678566 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 1871948 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2101636 20686145 ~ 20692387 (+)
G53517 NA non-coding upstream 18585 18528343 ~ 18536374 (+)
G53495 NA non-coding upstream 82682 18420852 ~ 18472277 (+)
G53496 NA non-coding upstream 125006 18427665 ~ 18429953 (+)
G53493 NA non-coding upstream 144829 18408926 ~ 18410130 (+)
G53458 eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852 non-coding upstream 152740 18401505 ~ 18402219 (+)
G53524 NA non-coding downstream 8543 18593052 ~ 18593516 (+)
G53542 NA non-coding downstream 17220 18601729 ~ 18601952 (+)
G53567 NA non-coding downstream 137599 18722108 ~ 18722401 (+)
G53572 NA non-coding downstream 198639 18783148 ~ 18783749 (+)
G53581 NA non-coding downstream 343228 18927737 ~ 18928175 (+)
G53520 NA other upstream 999 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 634367 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 824299 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1211283 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1804161 16746687 ~ 16750798 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 943388 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1792286 20376795 ~ 20396356 (+)
G53911 NA other downstream 2583722 21168231 ~ 21168575 (+)
G53915 NA other downstream 2690102 21274611 ~ 21275354 (+)
G53917 NA other downstream 2707732 21292241 ~ 21293901 (+)

Expression


Co-expression Network