G53524


Basic Information

Item Value
gene id G53524
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18593052 ~ 18593516 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66952
catttaattattgtttttgttacacTTTCGGTTTGTCTCCGGTATTTTTTGACTATAGCTGAAATAATCGCTGACTAGTTTGTGTactaaaacaaagcaagcaaataaaaataaactgtaagcagCTCATAACTGCTGCAGATTATACATTCGTAGTTACCTTCTAAacctcatttaaatgtttatttgatatttcatttggttgtcacattgattaatgatgtgtgcgttatatatacttacacctggaaaagcaaagtatatcactAAGGGGCAAATAGCGGCAATTCGTTTTTAACTATTCCGCCTGACCGTTGTCCGTTGTTTCGGGTGTAGCTCACACAGGAAATGTCTTATCTTCACAATTTAAACGCTATTGATTAGAgccagcgattctgcacagatgAATATATAACATGTTACCATATGTTAcaatttcactgagagagaagagcactaataatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66952 True 465 lncRNA 0.34 1 18593052 18593516

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 218784 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 372799 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 552091 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 570733 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 588311 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1267762 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1345560 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1669559 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 1862941 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2092629 20686145 ~ 20692387 (+)
G53519 NA non-coding upstream 8543 18554959 ~ 18584509 (+)
G53517 NA non-coding upstream 56678 18528343 ~ 18536374 (+)
G53495 NA non-coding upstream 120775 18420852 ~ 18472277 (+)
G53496 NA non-coding upstream 163099 18427665 ~ 18429953 (+)
G53493 NA non-coding upstream 182922 18408926 ~ 18410130 (+)
G53542 NA non-coding downstream 8213 18601729 ~ 18601952 (+)
G53567 NA non-coding downstream 128592 18722108 ~ 18722401 (+)
G53572 NA non-coding downstream 189632 18783148 ~ 18783749 (+)
G53581 NA non-coding downstream 334221 18927737 ~ 18928175 (+)
G53585 LOC100846954 non-coding downstream 400369 18993885 ~ 19042745 (+)
G53520 NA other upstream 39092 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 672460 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 862392 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1249376 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1842254 16746687 ~ 16750798 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 934381 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1783279 20376795 ~ 20396356 (+)
G53911 NA other downstream 2574715 21168231 ~ 21168575 (+)
G53915 NA other downstream 2681095 21274611 ~ 21275354 (+)
G53917 NA other downstream 2698725 21292241 ~ 21293901 (+)

Expression


Co-expression Network