Gene
RNA
| Item | Value |
|---|---|
| gene id | G53542 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 18601729 ~ 18601952 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU66974 | True | 224 | lncRNA | 0.33 | 1 | 18601729 | 18601952 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009016 | rfc4,LOC103355474 | coding | upstream | 227461 | 18361526 ~ 18374268 (+) |
| AMCG00009014 | NA | coding | upstream | 381476 | 18219072 ~ 18220253 (+) |
| AMCG00009006 | ect2,LOC107593151 | coding | upstream | 560768 | 18036794 ~ 18040961 (+) |
| AMCG00009008 | NA | coding | upstream | 579410 | 18013706 ~ 18022319 (+) |
| AMCG00009010 | NA | coding | upstream | 596988 | 17976034 ~ 18004741 (+) |
| AMCG00009026 | LOC107550661,LOC107566880 | coding | downstream | 1259326 | 19861278 ~ 19915906 (+) |
| AMCG00009025 | atp11b | coding | downstream | 1337124 | 19939076 ~ 19949435 (+) |
| AMCG00009032 | NA | coding | downstream | 1661123 | 20263075 ~ 20263866 (+) |
| AMCG00009034 | nlgn1 | coding | downstream | 1854505 | 20456457 ~ 20461014 (+) |
| AMCG00009035 | nlgn1,LOC106584306 | coding | downstream | 2084193 | 20686145 ~ 20692387 (+) |
| G53524 | NA | non-coding | upstream | 8213 | 18593052 ~ 18593516 (+) |
| G53519 | NA | non-coding | upstream | 17220 | 18554959 ~ 18584509 (+) |
| G53517 | NA | non-coding | upstream | 65355 | 18528343 ~ 18536374 (+) |
| G53495 | NA | non-coding | upstream | 129452 | 18420852 ~ 18472277 (+) |
| G53496 | NA | non-coding | upstream | 171776 | 18427665 ~ 18429953 (+) |
| G53567 | NA | non-coding | downstream | 120156 | 18722108 ~ 18722401 (+) |
| G53572 | NA | non-coding | downstream | 181196 | 18783148 ~ 18783749 (+) |
| G53581 | NA | non-coding | downstream | 325785 | 18927737 ~ 18928175 (+) |
| G53585 | LOC100846954 | non-coding | downstream | 391933 | 18993885 ~ 19042745 (+) |
| G53627 | LOC107575789 | non-coding | downstream | 717829 | 19319781 ~ 19320284 (+) |
| G53520 | NA | other | upstream | 47769 | 18550772 ~ 18553960 (+) |
| AMCG00009009 | NA | other | upstream | 681137 | 17917548 ~ 17920592 (+) |
| G53298 | mybpc2 | other | upstream | 871069 | 17729366 ~ 17730660 (+) |
| AMCG00008995 | NA | other | upstream | 1258053 | 17330892 ~ 17343676 (+) |
| AMCG00008986 | shank1,LOC108427331 | other | upstream | 1850931 | 16746687 ~ 16750798 (+) |
| AMCG00009022 | dnajc19,LOC107727073 | other | downstream | 925945 | 19527897 ~ 19547507 (+) |
| AMCG00009033 | nlgn1,LOC103399994,LOC102210587,LOC102311540 | other | downstream | 1774843 | 20376795 ~ 20396356 (+) |
| G53911 | NA | other | downstream | 2566279 | 21168231 ~ 21168575 (+) |
| G53915 | NA | other | downstream | 2672659 | 21274611 ~ 21275354 (+) |
| G53917 | NA | other | downstream | 2690289 | 21292241 ~ 21293901 (+) |
