G53581



Basic Information


Item Value
gene id G53581
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18927737 ~ 18928175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU67014
ttctaccttagttcaccaccagaggtctccctctcccgaatactaactctagtgcttctcctttcctttgtccagttcaaccagttcttccacattctttccttccaggtgcacctgttctgtcctcctctcctgtcattggttagtcattcattcacctagttcaaaccctctttgctacacagtatttaaacccctctgtttcctagcttctttgcttccctctctcgtttacccctttcggatctccctactagcctgttcgc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU67014 True 266 lncRNA 0.47 2 18927737 18928175

Neighbor


gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 553469 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 707484 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 886776 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 905418 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 922996 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 933103 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1010901 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1334900 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 1528282 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 1757970 20686145 ~ 20692387 (+)
G53572 NA non-coding upstream 143988 18783148 ~ 18783749 (+)
G53567 NA non-coding upstream 205336 18722108 ~ 18722401 (+)
G53542 NA non-coding upstream 325785 18601729 ~ 18601952 (+)
G53524 NA non-coding upstream 334221 18593052 ~ 18593516 (+)
G53519 NA non-coding upstream 343228 18554959 ~ 18584509 (+)
G53585 LOC100846954 non-coding downstream 65710 18993885 ~ 19042745 (+)
G53627 LOC107575789 non-coding downstream 391606 19319781 ~ 19320284 (+)
G53630 NA non-coding downstream 423078 19351253 ~ 19351461 (+)
G53631 NA non-coding downstream 423360 19351535 ~ 19351799 (+)
G53645 NA non-coding downstream 560908 19489083 ~ 19489284 (+)
G53520 NA other upstream 373777 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 1007145 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 1197077 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1584061 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 2176939 16746687 ~ 16750798 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 599722 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1448620 20376795 ~ 20396356 (+)
G53911 NA other downstream 2240056 21168231 ~ 21168575 (+)
G53915 NA other downstream 2346436 21274611 ~ 21275354 (+)
G53917 NA other downstream 2364066 21292241 ~ 21293901 (+)

Expression



Co-expression Network