G53627 (LOC107575789)


Basic Information

Item Value
gene id G53627
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19319781 ~ 19320284 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67072
gctttcttgagcaggggcaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccattttcatgatcattgaaactccatggggtgagatcttgcatggagccccagaccaagggagactgacagttattttgggtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatgttcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaaactgattgattgatttcttctgtggacaggtgtcttttatacaggtaacgagctgagagtAGGAGCATTCCCTTtcagagagtgctcctaatctcagctcgttacctgtat

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67072 True 504 lncRNA 0.48 1 19319781 19320284

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 945513 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1099528 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 1278820 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 1297462 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 1315040 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 540994 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 618792 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 942791 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 1136173 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 1365861 20686145 ~ 20692387 (+)
G53585 LOC100846954 non-coding upstream 277036 18993885 ~ 19042745 (+)
G53581 NA non-coding upstream 391606 18927737 ~ 18928175 (+)
G53572 NA non-coding upstream 536032 18783148 ~ 18783749 (+)
G53567 NA non-coding upstream 597380 18722108 ~ 18722401 (+)
G53542 NA non-coding upstream 717829 18601729 ~ 18601952 (+)
G53630 NA non-coding downstream 30969 19351253 ~ 19351461 (+)
G53631 NA non-coding downstream 31251 19351535 ~ 19351799 (+)
G53645 NA non-coding downstream 168799 19489083 ~ 19489284 (+)
G53663 NA non-coding downstream 257036 19577320 ~ 19577907 (+)
G53675 NA non-coding downstream 361690 19681974 ~ 19682227 (+)
G53520 NA other upstream 765821 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 1399189 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 1589121 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1976105 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 2568983 16746687 ~ 16750798 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 207613 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1056511 20376795 ~ 20396356 (+)
G53911 NA other downstream 1847947 21168231 ~ 21168575 (+)
G53915 NA other downstream 1954327 21274611 ~ 21275354 (+)
G53917 NA other downstream 1971957 21292241 ~ 21293901 (+)

Expression


Co-expression Network