G53675


Basic Information

Item Value
gene id G53675
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19681974 ~ 19682227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67126
cagacagtctcaacaactctaagttacatttggtattttatgggttgtgttcAAGGCAGAGAAGATGGTTATTTCCTTCTTGATAggtgcaaacaagcttactaagcaaattgtaactaattaacaagagacatttaaattacttactacatagactttatgaatgaataacctcttggtcaaggatgccaactcagcaagttttgttaaacaacaagatgtagtgaaacaacagaatacagagccttagagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67126 True 254 lncRNA 0.34 1 19681974 19682227

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 1307706 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1461721 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 1641013 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 1659655 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 1677233 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 179051 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 256849 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 580848 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 774230 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 1003918 20686145 ~ 20692387 (+)
G53663 NA non-coding upstream 104067 19577320 ~ 19577907 (+)
G53645 NA non-coding upstream 192690 19489083 ~ 19489284 (+)
G53631 NA non-coding upstream 330175 19351535 ~ 19351799 (+)
G53630 NA non-coding upstream 330513 19351253 ~ 19351461 (+)
G53627 LOC107575789 non-coding upstream 361690 19319781 ~ 19320284 (+)
G53695 NA non-coding downstream 138352 19820579 ~ 19820929 (+)
G53706 NA non-coding downstream 277346 19959573 ~ 19960355 (+)
G53711 LOC107656862,LOC107568628,LOC107722250,LOC107708830,LOC107578399,LOC107681826 non-coding downstream 301642 19983869 ~ 19985883 (+)
G53762 NA non-coding downstream 347067 20029294 ~ 20030004 (+)
G53764 NA non-coding downstream 347929 20030156 ~ 20030431 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 134467 19527897 ~ 19547507 (+)
G53520 NA other upstream 1128014 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 1761382 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 1951314 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 2338298 17330892 ~ 17343676 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 694568 20376795 ~ 20396356 (+)
G53911 NA other downstream 1486004 21168231 ~ 21168575 (+)
G53915 NA other downstream 1592384 21274611 ~ 21275354 (+)
G53917 NA other downstream 1610014 21292241 ~ 21293901 (+)
G54263 NA other downstream 4201090 23883317 ~ 23975906 (+)

Expression


Co-expression Network