G53695


Basic Information

Item Value
gene id G53695
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19820579 ~ 19820929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67156
aaaatgattagacagaaaatagaggagcatcttaatgaaaaccatattcttggagatagtcaacatgggtttagatgaggcagatcatgtcttactaatttattagaattgaacatgcaactgcagctgtagatcatgtgaaagcatatgatatgatatacttagattttcagaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtataggaaacagagggtgtcgattaaaggagtcgcttctaactggagtgaggttgttagtggagttccacagggattag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67156 True 351 lncRNA 0.37 1 19820579 19820929

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 1446311 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1600326 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 1779618 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 1798260 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 1815838 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 40349 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 118147 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 442146 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 635528 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 865216 20686145 ~ 20692387 (+)
G53675 NA non-coding upstream 138352 19681974 ~ 19682227 (+)
G53663 NA non-coding upstream 242672 19577320 ~ 19577907 (+)
G53645 NA non-coding upstream 331295 19489083 ~ 19489284 (+)
G53631 NA non-coding upstream 468780 19351535 ~ 19351799 (+)
G53630 NA non-coding upstream 469118 19351253 ~ 19351461 (+)
G53706 NA non-coding downstream 138644 19959573 ~ 19960355 (+)
G53711 LOC107656862,LOC107568628,LOC107722250,LOC107708830,LOC107578399,LOC107681826 non-coding downstream 162940 19983869 ~ 19985883 (+)
G53762 NA non-coding downstream 208365 20029294 ~ 20030004 (+)
G53764 NA non-coding downstream 209227 20030156 ~ 20030431 (+)
G53791 NA non-coding downstream 282851 20103780 ~ 20104000 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 273072 19527897 ~ 19547507 (+)
G53520 NA other upstream 1266619 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 1899987 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 2089919 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 2476903 17330892 ~ 17343676 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 555866 20376795 ~ 20396356 (+)
G53911 NA other downstream 1347302 21168231 ~ 21168575 (+)
G53915 NA other downstream 1453682 21274611 ~ 21275354 (+)
G53917 NA other downstream 1471312 21292241 ~ 21293901 (+)
G54263 NA other downstream 4062388 23883317 ~ 23975906 (+)

Expression


Co-expression Network