G53706


Basic Information

Item Value
gene id G53706
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19959573 ~ 19960355 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67167
ccttggcagccatacatgcccatgccacaacatgcttcacagatgaggtggtatgagcagttccttcccttctgcatactcttctcttcctatCATTCTGgtagttgatctttgtctcatctgtccataggatgttgttccagaactgtacagaatctttaaatgtttttttggcaaactctaatctggtcttcctgtttctggtttacatcttgtggtaaaccctctgtatttgctctggtgaagtcttctcttgattgttgactttgacagatatgcctacctcctggagggtgttcttgattgGACAGATCAAgttgttgtgaaggggtttttcttcaccagggaaataattattctgtcatccaccacagttgttttctgtgatcTTCCGgaccttttggtgttcctgagctcaccagtgcgttctttctttttaagaatgtaccaaatagtttattttttttttgctatctctctgattggtttgttttgatttaaaaggcaaaactgaaggcaaaacacccaaagaacaagcaggaactaaagacagcatGGGTtccagtcattgactgcaaaggatttgcaaacaagtactgaaactcacattttaattaatgattattttagtttgtccaaatacttctgagtccctaaaattgggggggaccacatctaaaaatgggtgtaattcctacactgttcacccaatttggtgatgaaagtctatacttaaagcacatcttgtttcctgTGGTGGtatagagccaaaatgatgaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67167 True 783 lncRNA 0.39 1 19959573 19960355

Neighbor

gene id symbol gene type direction distance location
AMCG00009025 atp11b coding upstream 10138 19939076 ~ 19949435 (+)
AMCG00009026 LOC107550661,LOC107566880 coding upstream 43667 19861278 ~ 19915906 (+)
AMCG00009016 rfc4,LOC103355474 coding upstream 1585305 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1739320 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 1918612 18036794 ~ 18040961 (+)
AMCG00009032 NA coding downstream 302720 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 496102 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 725790 20686145 ~ 20692387 (+)
AMCG00009038 NA coding downstream 1037543 20997898 ~ 21087025 (+)
AMCG00009042 NA coding downstream 2469985 22430340 ~ 22441467 (+)
G53695 NA non-coding upstream 138644 19820579 ~ 19820929 (+)
G53675 NA non-coding upstream 277346 19681974 ~ 19682227 (+)
G53663 NA non-coding upstream 381666 19577320 ~ 19577907 (+)
G53645 NA non-coding upstream 470289 19489083 ~ 19489284 (+)
G53631 NA non-coding upstream 607774 19351535 ~ 19351799 (+)
G53711 LOC107656862,LOC107568628,LOC107722250,LOC107708830,LOC107578399,LOC107681826 non-coding downstream 23514 19983869 ~ 19985883 (+)
G53762 NA non-coding downstream 68939 20029294 ~ 20030004 (+)
G53764 NA non-coding downstream 69801 20030156 ~ 20030431 (+)
G53791 NA non-coding downstream 143425 20103780 ~ 20104000 (+)
G53793 LOC107745311 non-coding downstream 176277 20136632 ~ 20212802 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 412066 19527897 ~ 19547507 (+)
G53520 NA other upstream 1405613 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 2038981 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 2228913 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 2615897 17330892 ~ 17343676 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 416440 20376795 ~ 20396356 (+)
G53911 NA other downstream 1207876 21168231 ~ 21168575 (+)
G53915 NA other downstream 1314256 21274611 ~ 21275354 (+)
G53917 NA other downstream 1331886 21292241 ~ 21293901 (+)
G54263 NA other downstream 3922962 23883317 ~ 23975906 (+)

Expression


Co-expression Network